Factsheet for PGSC0003DMT400029024

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g006260.2.1	Tomato	mitochondrion, nucleus	83.28	83.28
VIT_14s0030g01830.t01	Wine grape	cytosol, mitochondrion	45.34	46.38
KRH18932	Soybean	mitochondrion	37.3	41.58
Bra010043.1-P	Field mustard	nucleus, peroxisome, plasma membrane, plastid	24.44	36.36
CDX86949	Canola	mitochondrion, nucleus, peroxisome, plastid	26.05	35.68
CDY00237	Canola	mitochondrion	25.4	35.11
GSMUA_Achr6P28060_001	Banana	mitochondrion	35.37	34.59
AT5G61920.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	25.08	32.77
PGSC0003DMT400037712	Potato	nucleus	22.19	26.34
PGSC0003DMT400006407	Potato	mitochondrion, nucleus	23.47	26.26
Os04t0479100-01	Rice	cytosol	31.83	24.38
OQU81803	Sorghum	nucleus, plastid	33.12	23.25
Zm00001d025689_P002	Maize	cytosol	32.8	21.29
TraesCS6D01G330600.1	Wheat	mitochondrion	30.23	21.22
TraesCS6A01G347500.1	Wheat	mitochondrion	30.55	20.97
TraesCS6B01G381000.1	Wheat	mitochondrion	30.23	20.35
PGSC0003DMT400068308	Potato	plastid	29.26	20.13
Zm00001d003291_P002	Maize	mitochondrion, plastid	31.51	19.1

Protein Annotations

EnsemblPlants:PGSC0003DMT400029024	EnsemblPlantsGene:PGSC0003DMG400011167	EntrezGene:102589843	ncoils:Coil	PANTHER:PTHR33405	PANTHER:PTHR33405:SF4
PGSC:PGSC0003DMG400011167	RefSeq:XP_006343566.1	RefSeq:XP_006343567.1	UniParc:UPI000296D598	UniProt:M1AS37	MapMan:35.1

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400011167]

Coordinates

chr7:+:1607560..1610876

Molecular Weight (calculated)

34654.2 Da

IEP (calculated)

6.664

GRAVY (calculated)

-0.616

Length

311 amino acids

Sequence
(BLAST)

001: MASRRQVPAS YGRSLQAPGM VLHEELAAGS RRIDPFPPPE LWHNRFGARA AELEHLAGDH HRLAATYVAL KQDLSAAQRE VLKLDEHIRS TQTESDIQVR
101: LLRDKIAKME VDLRTVESTR KNLEEVHLEA RSLVSANMEL SGKIHHVMQE LEKAHADVKK LPEMHAELDS LKKEHQELRK TFQYEKGLNI EKVEQMKLTE
201: KELIDMANEA ERLRAQVVIT EKRAQGIDPY GHPYMNSNPM YPAPPMHLPA HVDSYQRSHI PVALGAMGDS TYPYGSSVAI SAQGGTGAPP LPSTDGNVAW
301: GESHDAPQAG S

Best Arabidopsis Sequence Match ( AT1G67170.1 )
(BLAST)

001: MESKGRIHPS HHHMRRPLPG PGGCIAHPET FGNHGAIPPS AAQGVYPSFN MLPPPEVMEQ KFVAQHGELQ RLAIENQRLG GTHGSLRQEL AAAQHEIQML
101: HAQIGSMKSE REQRMMGLAE KVAKMETELQ KSEAVKLEMQ QARAEARSLV VAREELMSKV HQLTQELQKS RSDVQQIPAL MSELENLRQE YQQCRATYDY
201: EKKFYNDHLE SLQAMEKNYM TMAREVEKLQ AQLMNNANSD RRAGGPYGNN INAEIDASGH QSGNGYYEDA FGPQGYIPQP VAGNATGPNS VVGAAQYPYQ
301: GVTQPGYFPQ RPGYNFPRGP PGSYDPTTRL PTGPYGAPFP PGPSNNTPYA GTHGNPSRR

Arabidopsis Description

FLXL2Protein FLX-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q84TD8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.