Factsheet for VIT_14s0030g01830.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH18932	Soybean	mitochondrion	48.68	53.05
GSMUA_Achr6P28060_001	Banana	mitochondrion	48.03	45.91
PGSC0003DMT400029024	Potato	mitochondrion	46.38	45.34
Solyc07g006260.2.1	Tomato	mitochondrion, nucleus	45.72	44.69
Bra010043.1-P	Field mustard	nucleus, peroxisome, plasma membrane, plastid	27.3	39.71
CDY00237	Canola	mitochondrion	28.29	38.22
VIT_10s0003g02200.t01	Wine grape	cytosol, mitochondrion, nucleus	38.49	38.11
CDX86949	Canola	mitochondrion, nucleus, peroxisome, plastid	28.29	37.89
VIT_19s0014g00260.t01	Wine grape	cytosol, mitochondrion, nucleus	35.2	34.52
AT5G61920.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	26.64	34.03
Os04t0479100-01	Rice	cytosol	41.78	31.28
VIT_06s0004g07170.t01	Wine grape	mitochondrion	31.58	30.57
VIT_14s0083g00450.t01	Wine grape	mitochondrion	42.43	29.79
VIT_01s0011g03510.t01	Wine grape	extracellular, plastid	29.93	28.98
VIT_09s0002g02070.t01	Wine grape	mitochondrion	33.88	28.3
OQU81803	Sorghum	nucleus, plastid	40.46	27.77
TraesCS6D01G330600.1	Wheat	mitochondrion	40.13	27.54
TraesCS6A01G347500.1	Wheat	mitochondrion	40.79	27.37
TraesCS6B01G381000.1	Wheat	mitochondrion	40.46	26.62
Zm00001d025689_P002	Maize	cytosol	41.45	26.3
Zm00001d003291_P002	Maize	mitochondrion, plastid	40.13	23.78

Protein Annotations

EntrezGene:100246931	wikigene:100246931	MapMan:35.1	UniProt:A5C4T0	EMBL:AM482315	ProteinID:CAN62085
ProteinID:CAN62085.1	ProteinID:CCB58092	ProteinID:CCB58092.1	ncoils:Coil	EMBL:FN596249	EntrezGene:LOC100246931
wikigene:LOC100246931	PANTHER:PTHR33405	PANTHER:PTHR33405:SF4	UniParc:UPI00015228EC	ArrayExpress:VIT_14s0030g01830	EnsemblPlantsGene:VIT_14s0030g01830
EnsemblPlants:VIT_14s0030g01830.t01	RefSeq:XP_002277975	RefSeq:XP_002277975.1	RefSeq:XP_010659897.1	RefSeq:XP_010659898.1	RefSeq:XP_019080864.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr14:-:6711554..6713831

Molecular Weight (calculated)

33412.5 Da

IEP (calculated)

6.807

GRAVY (calculated)

-0.657

Length

304 amino acids

Sequence
(BLAST)

001: MAARGHRQPS FEGRAAQAPG MMRHGPFPGS GHTVGLRSLE TAPHPDIAEN KMLAQVAEIE RLAGDNHRLA ATHGALRQEL VAAQHEISRI KAQIRSIETE
101: SDIQIRVLME RIAKMEGDIR AGEHVKKELQ QAHIEAQSLV TARQELTTQV QQATQELQKA NADVKRLPEL HAELDSMGQE HQRLRSTFEY EKGLNVDQVR
201: EMQEMEKNLV VMAREVEKLR AEVLNAEKRA HAPNPYSGSY PEPSYPPPTQ GSGAYIDSYG RPHAQMIAGT PSAGMIPYGS VAIPPASSGA AWGGAYDPNS
301: HTQH

Best Arabidopsis Sequence Match ( AT1G67170.1 )
(BLAST)

001: MESKGRIHPS HHHMRRPLPG PGGCIAHPET FGNHGAIPPS AAQGVYPSFN MLPPPEVMEQ KFVAQHGELQ RLAIENQRLG GTHGSLRQEL AAAQHEIQML
101: HAQIGSMKSE REQRMMGLAE KVAKMETELQ KSEAVKLEMQ QARAEARSLV VAREELMSKV HQLTQELQKS RSDVQQIPAL MSELENLRQE YQQCRATYDY
201: EKKFYNDHLE SLQAMEKNYM TMAREVEKLQ AQLMNNANSD RRAGGPYGNN INAEIDASGH QSGNGYYEDA FGPQGYIPQP VAGNATGPNS VVGAAQYPYQ
301: GVTQPGYFPQ RPGYNFPRGP PGSYDPTTRL PTGPYGAPFP PGPSNNTPYA GTHGNPSRR

Arabidopsis Description

FLXL2Protein FLX-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q84TD8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.