Factsheet for VIT_01s0011g03510.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular

Predictor Summary:

nucleus 2
plastid 3
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400037712	Potato	nucleus	58.92	70.61
Solyc05g009290.2.1	Tomato	nucleus	57.01	69.92
TraesCS3B01G593200.1	Wheat	nucleus	36.62	43.07
TraesCS3D01G531200.1	Wheat	nucleus	36.31	42.7
TraesCS3A01G526000.1	Wheat	nucleus	36.31	42.7
Os08t0430100-01	Rice	mitochondrion	36.31	42.54
TraesCS3A01G524600.1	Wheat	nucleus	35.99	42.32
GSMUA_Achr8P23090_001	Banana	cytosol	45.86	41.98
HORVU3Hr1G114170.1	Barley	cytosol	35.03	41.2
TraesCS1A01G232900.1	Wheat	nucleus	21.02	40.74
TraesCS3B01G591900.1	Wheat	nucleus	34.39	40.45
TraesCS3D01G529800.1	Wheat	cytosol	34.39	40.45
Zm00001d052473_P001	Maize	nucleus	35.03	40.44
VIT_09s0002g02070.t01	Wine grape	mitochondrion	46.82	40.38
TraesCS1B01G246000.1	Wheat	nucleus	33.76	40.0
TraesCS1D01G234100.2	Wheat	nucleus	33.44	39.77
EES09236	Sorghum	nucleus	34.08	39.63
TraesCS1B01G180300.1	Wheat	nucleus	33.12	39.25
HORVU1Hr1G058340.3	Barley	nucleus	31.85	37.59
VIT_10s0003g02200.t01	Wine grape	cytosol, mitochondrion, nucleus	36.62	37.46
Zm00001d004959_P003	Maize	cytosol	33.76	36.81
VIT_19s0014g00260.t01	Wine grape	cytosol, mitochondrion, nucleus	32.8	33.23
VIT_06s0004g07170.t01	Wine grape	mitochondrion	29.94	29.94
VIT_14s0030g01830.t01	Wine grape	cytosol, mitochondrion	28.98	29.93
VIT_14s0083g00450.t01	Wine grape	mitochondrion	31.85	23.09

Protein Annotations

Gene3D:1.20.5.1000	EntrezGene:100242187	wikigene:100242187	MapMan:35.1	EMBL:AM459037	ProteinID:CAN76874
ProteinID:CAN76874.1	ProteinID:CCB50914	ProteinID:CCB50914.1	ncoils:Coil	UniProt:F6HEW9	EMBL:FN595752
EntrezGene:LOC100242187	wikigene:LOC100242187	PANTHER:PTHR33405	PANTHER:PTHR33405:SF14	SUPFAM:SSF90257	UniParc:UPI0002109604
ArrayExpress:VIT_01s0011g03510	EnsemblPlantsGene:VIT_01s0011g03510	EnsemblPlants:VIT_01s0011g03510.t01	unigene:Vvi.5520	RefSeq:XP_002282562	RefSeq:XP_002282562.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1:-:3180020..3185492

Molecular Weight (calculated)

35232.5 Da

IEP (calculated)

9.764

GRAVY (calculated)

-0.657

Length

314 amino acids

Sequence
(BLAST)

001: MISLLSICLI VASKKCSDVL KGNGLLIYCF RSKILSMAGR NRMPRNPNGF RGFRDGPPNP DGFRGFRDGP PPVLNRGPGP LPLHPVAMEE ELELQHRELQ
101: RIVAENRHVI DDNTMLQSEL AAAKDDIHRL GQIIPKLRAD REVQARELID RGLKLEADLR AVEPLRTEVI QLRAEAQKLN ASRQDLSAQV QGLTQDVARL
201: QAENQQLIAM RADIDRMRKE LAEARRAFEY EKKANEEQLE QKQAMEKNLI SMAREIEKLR ADQLNTDRRA RGLGGGGGYG LLNGSPEMRY PGGAFGDGYG
301: GVWGPYDKRG PPRR

Best Arabidopsis Sequence Match ( AT1G55170.1 )
(BLAST)

001: MSGRNRIHRD IRDSYHDHRD LPPERPFLRG PPLLQPPPPS LLEDLQIQEG EIRRQDAEIR RLLSDNHGLA DDRMVLEREL VAAKEELHRM NLMISDLRAE
101: QDLQLREFSE KRHKLEGDVR AMESYKKEAS QLRGEVQKLD EIKRELSGNV QLLRKDLAKL QSDNKQIPGM RAEVKDLQKE LMHARDAIEY EKKEKFELME
201: QRQTMEKNMV SMAREVEKLR AELATVDSRP WGFGGSYGMN YNNMDGTFRG SYGENDTYLG SSERSQYYSH GSGSQKKPRL DRH

Arabidopsis Description

FLXL3Protein FLX-like 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C717]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.