Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G234100.2 | Wheat | nucleus | 95.68 | 58.71 |
| TraesCS1B01G246000.1 | Wheat | nucleus | 95.68 | 58.49 |
| HORVU1Hr1G058340.3 | Barley | nucleus | 91.98 | 56.02 |
| TraesCS3A01G524600.1 | Wheat | nucleus | 85.8 | 52.06 |
| TraesCS3A01G526000.1 | Wheat | nucleus | 85.19 | 51.69 |
| Os08t0430100-01 | Rice | mitochondrion | 79.01 | 47.76 |
| EES09236 | Sorghum | nucleus | 70.99 | 42.59 |
| Zm00001d052473_P001 | Maize | nucleus | 70.99 | 42.28 |
| Zm00001d004959_P003 | Maize | cytosol | 72.22 | 40.62 |
| PGSC0003DMT400037712 | Potato | nucleus | 38.89 | 24.05 |
| Solyc05g009290.2.1 | Tomato | nucleus | 36.42 | 23.05 |
| VIT_01s0011g03510.t01 | Wine grape | extracellular, plastid | 40.74 | 21.02 |
| GSMUA_Achr8P23090_001 | Banana | cytosol | 44.44 | 20.99 |
| TraesCS5A01G121400.1 | Wheat | nucleus | 30.86 | 15.38 |
| TraesCS2A01G226300.1 | Wheat | nucleus | 29.01 | 13.58 |
| TraesCS5A01G473300.1 | Wheat | cytosol, mitochondrion, nucleus | 22.22 | 10.62 |
| TraesCS6A01G169900.1 | Wheat | nucleus | 24.07 | 8.35 |
| TraesCS6A01G347500.1 | Wheat | mitochondrion | 19.14 | 6.84 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G232900.1 | EnsemblPlantsGene:TraesCS1A01G232900 | ncoils:Coil | PANTHER:PTHR33405 | PANTHER:PTHR33405:SF14 | SEG:seg |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr1A:+:406189790..406190829
Molecular Weight (calculated)
18964.4 Da
IEP (calculated)
8.959
GRAVY (calculated)
-1.111
Length
162 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGKHRISRQ YYEEPRGFRD GPPPRLAQER SISPRRFEGE LSSRRDEIRR IRDDNQHLVD EIVGLRQAMS HLKEDLYSSS QAIPKLRAEK ELESRELTQR
101: NLKLEAELRS LEPHRQDALQ LRSEVGTLQS LRQELTEKVQ GLTKEVEHQN SEKQRISAMV AE
101: NLKLEAELRS LEPHRQDALQ LRSEVGTLQS LRQELTEKVQ GLTKEVEHQN SEKQRISAMV AE
001: MSGRNRIHRD IRDSYHDHRD LPPERPFLRG PPLLQPPPPS LLEDLQIQEG EIRRQDAEIR RLLSDNHGLA DDRMVLEREL VAAKEELHRM NLMISDLRAE
101: QDLQLREFSE KRHKLEGDVR AMESYKKEAS QLRGEVQKLD EIKRELSGNV QLLRKDLAKL QSDNKQIPGM RAEVKDLQKE LMHARDAIEY EKKEKFELME
201: QRQTMEKNMV SMAREVEKLR AELATVDSRP WGFGGSYGMN YNNMDGTFRG SYGENDTYLG SSERSQYYSH GSGSQKKPRL DRH
101: QDLQLREFSE KRHKLEGDVR AMESYKKEAS QLRGEVQKLD EIKRELSGNV QLLRKDLAKL QSDNKQIPGM RAEVKDLQKE LMHARDAIEY EKKEKFELME
201: QRQTMEKNMV SMAREVEKLR AELATVDSRP WGFGGSYGMN YNNMDGTFRG SYGENDTYLG SSERSQYYSH GSGSQKKPRL DRH
Arabidopsis Description
FLXL3Protein FLX-like 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C717]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.