Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G531200.1 | Wheat | nucleus | 96.25 | 96.25 |
| TraesCS3B01G593200.1 | Wheat | nucleus | 95.51 | 95.51 |
| HORVU3Hr1G114170.1 | Barley | cytosol | 91.39 | 91.39 |
| TraesCS3A01G524600.1 | Wheat | nucleus | 88.39 | 88.39 |
| TraesCS1A01G232900.1 | Wheat | nucleus | 51.69 | 85.19 |
| Os08t0430100-01 | Rice | mitochondrion | 75.66 | 75.37 |
| Zm00001d052473_P001 | Maize | nucleus | 67.04 | 65.81 |
| EES09236 | Sorghum | nucleus | 65.92 | 65.19 |
| Zm00001d004959_P003 | Maize | cytosol | 68.54 | 63.54 |
| PGSC0003DMT400037712 | Potato | nucleus | 40.45 | 41.22 |
| Solyc05g009290.2.1 | Tomato | nucleus | 38.95 | 40.62 |
| VIT_01s0011g03510.t01 | Wine grape | extracellular, plastid | 42.7 | 36.31 |
| GSMUA_Achr8P23090_001 | Banana | cytosol | 45.32 | 35.28 |
| TraesCS5A01G121400.1 | Wheat | nucleus | 32.58 | 26.77 |
| TraesCS2A01G226300.1 | Wheat | nucleus | 30.34 | 23.41 |
| TraesCS5A01G473300.1 | Wheat | cytosol, mitochondrion, nucleus | 22.47 | 17.7 |
| TraesCS6A01G169900.1 | Wheat | nucleus | 26.97 | 15.42 |
| TraesCS6A01G347500.1 | Wheat | mitochondrion | 23.22 | 13.69 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G526000.1 | EnsemblPlantsGene:TraesCS3A01G526000 | ncoils:Coil | PANTHER:PTHR33405 | PANTHER:PTHR33405:SF14 | SEG:seg |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr3A:-:739733996..739735037
Molecular Weight (calculated)
30611.3 Da
IEP (calculated)
9.445
GRAVY (calculated)
-1.039
Length
267 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGRQRIGRE YYEEPRVFRD GPPPRLARER SVSPRRFEGE LSSRRGELRR IRDDNQHLVD EIVGLRQAMS RLKEDLHSSS QVIPKLRAEK ELESRELTQR
101: NLKLEAELRS LEPLRQDALQ LRSEAGSLES LRQELNAKVQ GLTKELEQQS SENQRIPAMI AERDDLRQEL IRARAALDYE KNAKPELMAQ VQAVEKDLVS
201: MAQESEKLRA EIEKRRAQPP RVSGYGAYGP PPGMGLQGMY DSGYNTYTDR RHGTGAGPWD PPSYPRP
101: NLKLEAELRS LEPLRQDALQ LRSEAGSLES LRQELNAKVQ GLTKELEQQS SENQRIPAMI AERDDLRQEL IRARAALDYE KNAKPELMAQ VQAVEKDLVS
201: MAQESEKLRA EIEKRRAQPP RVSGYGAYGP PPGMGLQGMY DSGYNTYTDR RHGTGAGPWD PPSYPRP
001: MSGRNRIHRD IRDSYHDHRD LPPERPFLRG PPLLQPPPPS LLEDLQIQEG EIRRQDAEIR RLLSDNHGLA DDRMVLEREL VAAKEELHRM NLMISDLRAE
101: QDLQLREFSE KRHKLEGDVR AMESYKKEAS QLRGEVQKLD EIKRELSGNV QLLRKDLAKL QSDNKQIPGM RAEVKDLQKE LMHARDAIEY EKKEKFELME
201: QRQTMEKNMV SMAREVEKLR AELATVDSRP WGFGGSYGMN YNNMDGTFRG SYGENDTYLG SSERSQYYSH GSGSQKKPRL DRH
101: QDLQLREFSE KRHKLEGDVR AMESYKKEAS QLRGEVQKLD EIKRELSGNV QLLRKDLAKL QSDNKQIPGM RAEVKDLQKE LMHARDAIEY EKKEKFELME
201: QRQTMEKNMV SMAREVEKLR AELATVDSRP WGFGGSYGMN YNNMDGTFRG SYGENDTYLG SSERSQYYSH GSGSQKKPRL DRH
Arabidopsis Description
FLXL3Protein FLX-like 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C717]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.