Factsheet for PGSC0003DMT400056899

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400012712
PGSC0003DMT400049768
PGSC0003DMT400071914
PGSC0003DMT400074781

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G12930.1	PGSC0003DMT400071914	AT3G56220.1	21798944
AT3G12930.1	PGSC0003DMT400074781	AT3G56270.1	21798944
AT3G12930.1	PGSC0003DMT400049768	AT4G02590.1	21798944
AT3G12930.1	PGSC0003DMT400012712	AT4G08150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g066460.2.1	Tomato	plastid	96.14	96.14
CDY43388	Canola	extracellular	49.79	60.1
VIT_19s0027g00700.t01	Wine grape	plastid	53.22	56.62
KRH13673	Soybean	plastid	54.51	52.92
Bra039355.1-P	Field mustard	plastid	52.79	52.56
AT3G12930.1	Thale cress	plastid	53.65	52.52
GSMUA_Achr4P09860_001	Banana	plastid	49.36	52.27
Bra034716.1-P	Field mustard	plastid	52.79	51.9
CDY24236	Canola	plastid	52.79	51.9
CDY60119	Canola	plastid	51.93	51.05
CDY23554	Canola	plastid	51.5	50.63
Os09t0493600-01	Rice	plastid	45.92	47.56
TraesCS5B01G271700.1	Wheat	mitochondrion, plastid	45.92	47.56
TraesCS5D01G279000.1	Wheat	mitochondrion, plastid	45.49	47.11
KRH43792	Soybean	plastid	53.65	46.3
TraesCS5A01G271400.1	Wheat	mitochondrion, plastid	45.06	46.26
EER99115	Sorghum	plastid	44.64	46.02
Zm00001d020971_P002	Maize	plastid	44.21	43.64

Protein Annotations

EntrezGene:102581057	Gene3D:3.30.460.10	MapMan:35.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0009507	GO:GO:0009536	InterPro:Iojap/RsfS/C7orf30	UniProt:M1C016	HAMAP:MF_01477
PFAM:PF02410	EnsemblPlantsGene:PGSC0003DMG400022127	PGSC:PGSC0003DMG400022127	EnsemblPlants:PGSC0003DMT400056899	PANTHER:PTHR21043	PANTHER:PTHR21043:SF1
SUPFAM:SSF81301	TIGRFAMs:TIGR00090	UniParc:UPI000294930C	RefSeq:XP_006346039.1	SEG:seg	:

Description

Iojap protein [Source:PGSC_GENE;Acc:PGSC0003DMG400022127]

Coordinates

chr7:-:56500598..56506327

Molecular Weight (calculated)

26111.8 Da

IEP (calculated)

6.030

GRAVY (calculated)

-0.343

Length

233 amino acids

Sequence
(BLAST)

001: MKVHSCIHPL PCTPSTGILV SGGRTEAKLA ANTRKLYSLT LNSSNYAPFH YKDLKFSRSS SMDFSRMAIG SNVSEDTDDM FDDLLRTHGK VVYKRNDQKP
101: ASEEIDDDAE SLSFAMAVAK VASDVKAGDI KVLFVKPLVY WTRFFIIATA FSRPQIDAIG TRVRDMAEEQ YGRVASGDSK PNSWTLLDFG DVVVHLFLPP
201: QREYYNLEEF YGNAASIELP FENQQQLRGP TGY

Best Arabidopsis Sequence Match ( AT3G12930.1 )
(BLAST)

001: MASSTGLTVA GALLAGDFRL PAVSSLIPRK TSSSLSCLSN RDLSSPYNCC WRLSRGKILT SLSNSRKFAV GKEAEDGFLS NVSEDTDEMF DDLFNKYGKV
101: VFRSTDVKSP TAEVDDDAES LAFAVELAKV ASDVKAGDIK VLFVKPLVYW TRFFIIATAF SRPQIDAIGS RMRDLAEKKY GKVANGDVKP NSWTLLDFGD
201: VVIHLFLPPQ RTFYNLEDFY GNAMQIELPF EDQSQPRN

Arabidopsis Description

IJProtein Iojap, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LDY9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.