Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 5
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G271700.1 | Wheat | mitochondrion, plastid | 97.33 | 97.33 |
| TraesCS5A01G271400.1 | Wheat | mitochondrion, plastid | 94.67 | 93.83 |
| Os09t0493600-01 | Rice | plastid | 72.0 | 72.0 |
| EER99115 | Sorghum | plastid | 68.44 | 68.14 |
| Zm00001d020971_P002 | Maize | plastid | 68.89 | 65.68 |
| GSMUA_Achr4P09860_001 | Banana | plastid | 52.0 | 53.18 |
| CDY43388 | Canola | extracellular | 44.0 | 51.3 |
| AT3G12930.1 | Thale cress | plastid | 48.89 | 46.22 |
| PGSC0003DMT400056899 | Potato | plastid | 47.11 | 45.49 |
| VIT_19s0027g00700.t01 | Wine grape | plastid | 44.0 | 45.21 |
| Solyc07g066460.2.1 | Tomato | plastid | 46.67 | 45.06 |
| Bra039355.1-P | Field mustard | plastid | 46.22 | 44.44 |
| Bra034716.1-P | Field mustard | plastid | 46.67 | 44.3 |
| CDY60119 | Canola | plastid | 46.67 | 44.3 |
| KRH13673 | Soybean | plastid | 47.11 | 44.17 |
| CDY23554 | Canola | plastid | 46.22 | 43.88 |
| CDY24236 | Canola | plastid | 45.78 | 43.46 |
| KRH43792 | Soybean | plastid | 47.11 | 39.26 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G279000.1 | EnsemblPlantsGene:TraesCS5D01G279000 | Gene3D:3.30.460.10 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0009507 | GO:GO:0009536 | HAMAP:MF_01477 | InterPro:Iojap/RsfS/C7orf30 | PANTHER:PTHR21043 |
| PANTHER:PTHR21043:SF1 | PFAM:PF02410 | SEG:seg | SUPFAM:SSF81301 | TIGRFAMs:TIGR00090 | MapMan:35.1 |
Description
No Description!
Coordinates
chr5D:-:381029499..381031811
Molecular Weight (calculated)
24285.9 Da
IEP (calculated)
5.321
GRAVY (calculated)
-0.037
Length
225 amino acids
Sequence
(BLAST)
(BLAST)
001: MRGAAIQGHG LARAPPAAVP LLHPRPRRAV GVVPRHRLRS DLLPLLLPAA APFRARSPPS SSSSNVNPGT GEGADELLEE LLQKHGEVVY SSGGGGSAAL
101: ASEADEDAEC LSLAVSLAKV ASEVKAADIR VLFVKPIVYW TEFFIILTAF SNAQIEAISS KMRDIGEQQF SRVASGDTKP NSWTLLDFGD VVVHIFLPPQ
201: REFYNLEEFY GNATPIELPF ETQLQ
101: ASEADEDAEC LSLAVSLAKV ASEVKAADIR VLFVKPIVYW TEFFIILTAF SNAQIEAISS KMRDIGEQQF SRVASGDTKP NSWTLLDFGD VVVHIFLPPQ
201: REFYNLEEFY GNATPIELPF ETQLQ
001: MASSTGLTVA GALLAGDFRL PAVSSLIPRK TSSSLSCLSN RDLSSPYNCC WRLSRGKILT SLSNSRKFAV GKEAEDGFLS NVSEDTDEMF DDLFNKYGKV
101: VFRSTDVKSP TAEVDDDAES LAFAVELAKV ASDVKAGDIK VLFVKPLVYW TRFFIIATAF SRPQIDAIGS RMRDLAEKKY GKVANGDVKP NSWTLLDFGD
201: VVIHLFLPPQ RTFYNLEDFY GNAMQIELPF EDQSQPRN
101: VFRSTDVKSP TAEVDDDAES LAFAVELAKV ASDVKAGDIK VLFVKPLVYW TRFFIIATAF SRPQIDAIGS RMRDLAEKKY GKVANGDVKP NSWTLLDFGD
201: VVIHLFLPPQ RTFYNLEDFY GNAMQIELPF EDQSQPRN
Arabidopsis Description
IJProtein Iojap, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LDY9]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.