Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 1
- nucleus 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH13673 | Soybean | plastid | 83.7 | 94.17 |
| CDY43388 | Canola | extracellular | 45.56 | 63.73 |
| Bra039355.1-P | Field mustard | plastid | 51.85 | 59.83 |
| AT3G12930.1 | Thale cress | plastid | 52.59 | 59.66 |
| CDY24236 | Canola | plastid | 52.22 | 59.49 |
| VIT_19s0027g00700.t01 | Wine grape | plastid | 47.78 | 58.9 |
| Bra034716.1-P | Field mustard | plastid | 51.11 | 58.23 |
| CDY60119 | Canola | plastid | 50.0 | 56.96 |
| CDY23554 | Canola | plastid | 50.0 | 56.96 |
| GSMUA_Achr4P09860_001 | Banana | plastid | 45.19 | 55.45 |
| PGSC0003DMT400056899 | Potato | plastid | 46.3 | 53.65 |
| Solyc07g066460.2.1 | Tomato | plastid | 45.93 | 53.22 |
| EER99115 | Sorghum | plastid | 40.0 | 47.79 |
| Os09t0493600-01 | Rice | plastid | 39.63 | 47.56 |
| TraesCS5B01G271700.1 | Wheat | mitochondrion, plastid | 39.26 | 47.11 |
| TraesCS5D01G279000.1 | Wheat | mitochondrion, plastid | 39.26 | 47.11 |
| TraesCS5A01G271400.1 | Wheat | mitochondrion, plastid | 39.26 | 46.7 |
| Zm00001d020971_P002 | Maize | plastid | 40.0 | 45.76 |
Protein Annotations
| Gene3D:3.30.460.10 | MapMan:35.1 | UniProt:A0A0R0INC8 | EMBL:ACUP02004897 | EnsemblPlantsGene:GLYMA_08G172200 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0017148 | GO:GO:0019538 | GO:GO:0043023 | GO:GO:0090071 | InterPro:Iojap/RsfS/C7orf30 | EnsemblPlants:KRH43792 |
| ProteinID:KRH43792 | ProteinID:KRH43792.1 | HAMAP:MF_01477 | PFAM:PF02410 | PANTHER:PTHR21043 | PANTHER:PTHR21043:SF1 |
| SUPFAM:SSF81301 | TIGRFAMs:TIGR00090 | UniParc:UPI00023C68E9 | : | : | : |
Description
hypothetical protein
Coordinates
chr8:-:13705737..13710546
Molecular Weight (calculated)
30377.2 Da
IEP (calculated)
9.215
GRAVY (calculated)
-0.221
Length
270 amino acids
Sequence
(BLAST)
(BLAST)
001: MTEITIISRD PFPIFISLSF VRRYLFLPRQ MLPSSTVLSL AGTRAGVPVS FSGELGHLET KFSSRPRKVF SRSCIKGIPL QQNTINGLNS KNRNSLSSFA
101: FGKKAEDSFF SDVNGDTDEM YDELINNYGK VVFSRKDKKP ASAEIDDDAE SLSFAVELAT VASEVKAGDI KVLFVKPLVY WTRFFIIATA FSRPQIDAIG
201: SRIRDRAEKK YGKIPTGDTK PNSWTLLDFG DVVVHIFLPS QRAFYNLEEF YGNATQVELP FENQPPPYRI
101: FGKKAEDSFF SDVNGDTDEM YDELINNYGK VVFSRKDKKP ASAEIDDDAE SLSFAVELAT VASEVKAGDI KVLFVKPLVY WTRFFIIATA FSRPQIDAIG
201: SRIRDRAEKK YGKIPTGDTK PNSWTLLDFG DVVVHIFLPS QRAFYNLEEF YGNATQVELP FENQPPPYRI
001: MASSTGLTVA GALLAGDFRL PAVSSLIPRK TSSSLSCLSN RDLSSPYNCC WRLSRGKILT SLSNSRKFAV GKEAEDGFLS NVSEDTDEMF DDLFNKYGKV
101: VFRSTDVKSP TAEVDDDAES LAFAVELAKV ASDVKAGDIK VLFVKPLVYW TRFFIIATAF SRPQIDAIGS RMRDLAEKKY GKVANGDVKP NSWTLLDFGD
201: VVIHLFLPPQ RTFYNLEDFY GNAMQIELPF EDQSQPRN
101: VFRSTDVKSP TAEVDDDAES LAFAVELAKV ASDVKAGDIK VLFVKPLVYW TRFFIIATAF SRPQIDAIGS RMRDLAEKKY GKVANGDVKP NSWTLLDFGD
201: VVIHLFLPPQ RTFYNLEDFY GNAMQIELPF EDQSQPRN
Arabidopsis Description
IJProtein Iojap, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LDY9]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.