Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra039355.1-P | Field mustard | plastid | 94.51 | 95.73 |
| CDY43388 | Canola | extracellular | 67.51 | 82.9 |
| AT3G12930.1 | Thale cress | plastid | 82.7 | 82.35 |
| CDY23554 | Canola | plastid | 81.43 | 81.43 |
| CDY60119 | Canola | plastid | 81.01 | 81.01 |
| KRH13673 | Soybean | plastid | 59.92 | 59.17 |
| VIT_19s0027g00700.t01 | Wine grape | plastid | 54.01 | 58.45 |
| GSMUA_Achr4P09860_001 | Banana | plastid | 51.05 | 55.0 |
| Solyc07g066460.2.1 | Tomato | plastid | 52.32 | 53.22 |
| PGSC0003DMT400056899 | Potato | plastid | 51.9 | 52.79 |
| KRH43792 | Soybean | plastid | 59.49 | 52.22 |
| EER99115 | Sorghum | plastid | 46.41 | 48.67 |
| Os09t0493600-01 | Rice | plastid | 45.57 | 48.0 |
| TraesCS5A01G271400.1 | Wheat | mitochondrion, plastid | 43.88 | 45.81 |
| TraesCS5D01G279000.1 | Wheat | mitochondrion, plastid | 43.46 | 45.78 |
| TraesCS5B01G271700.1 | Wheat | mitochondrion, plastid | 43.04 | 45.33 |
| Zm00001d020971_P002 | Maize | plastid | 44.73 | 44.92 |
Protein Annotations
| EnsemblPlants:CDY24236 | EnsemblPlantsGene:GSBRNA2T00026350001 | Gene3D:3.30.460.10 | HAMAP:MF_01477 | InterPro:Iojap/RsfS/C7orf30 | PANTHER:PTHR21043 |
| PANTHER:PTHR21043:SF1 | PFAM:PF02410 | ProteinID:CDY24236 | ProteinID:CDY24236.1 | SEG:seg | SUPFAM:SSF81301 |
| TIGRFAMs:TIGR00090 | UniParc:UPI0004EDE442 | UniProt:A0A078GFU0 | MapMan:35.1 | : | : |
Description
BnaC01g38160DBnaC01g38160D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GFU0]
Coordinates
chrLK032155:-:445105..447109
Molecular Weight (calculated)
26338.1 Da
IEP (calculated)
4.965
GRAVY (calculated)
-0.220
Length
237 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSTVLNVA GALLSGDFRL PFLSSQRLRK SSSSASMFRL SNGDLSAPYT CSWRLSRDKA LTNSKSFAVG REAEDGFLSN VSEDSDEMFD DLFNKYGKVV
101: YKSDDLKSPT AEVDDDAESL AFAVEMAKVA SEVKAGDIKV LFVKPLVYWT RFFIIATAFS RPQIDAIGSR MRDMAEKKYG KVANGDVKPN AWTLLDFGDV
201: VIHLFLPPQR TFYNLEDFYG NAMSVPLPFE DQTPPRS
101: YKSDDLKSPT AEVDDDAESL AFAVEMAKVA SEVKAGDIKV LFVKPLVYWT RFFIIATAFS RPQIDAIGSR MRDMAEKKYG KVANGDVKPN AWTLLDFGDV
201: VIHLFLPPQR TFYNLEDFYG NAMSVPLPFE DQTPPRS
001: MASSTGLTVA GALLAGDFRL PAVSSLIPRK TSSSLSCLSN RDLSSPYNCC WRLSRGKILT SLSNSRKFAV GKEAEDGFLS NVSEDTDEMF DDLFNKYGKV
101: VFRSTDVKSP TAEVDDDAES LAFAVELAKV ASDVKAGDIK VLFVKPLVYW TRFFIIATAF SRPQIDAIGS RMRDLAEKKY GKVANGDVKP NSWTLLDFGD
201: VVIHLFLPPQ RTFYNLEDFY GNAMQIELPF EDQSQPRN
101: VFRSTDVKSP TAEVDDDAES LAFAVELAKV ASDVKAGDIK VLFVKPLVYW TRFFIIATAF SRPQIDAIGS RMRDLAEKKY GKVANGDVKP NSWTLLDFGD
201: VVIHLFLPPQ RTFYNLEDFY GNAMQIELPF EDQSQPRN
Arabidopsis Description
IJProtein Iojap, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LDY9]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.