Factsheet for AT3G12930.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039355.1-P	Field mustard	plastid	81.51	82.91
CDY24236	Canola	plastid	82.35	82.7
Bra034716.1-P	Field mustard	plastid	78.99	79.32
CDY60119	Canola	plastid	78.15	78.48
CDY23554	Canola	plastid	77.73	78.06
CDY43388	Canola	extracellular	60.92	75.13
VIT_19s0027g00700.t01	Wine grape	plastid	55.46	60.27
KRH13673	Soybean	plastid	59.66	59.17
Solyc07g066460.2.1	Tomato	plastid	52.52	53.65
PGSC0003DMT400056899	Potato	plastid	52.52	53.65
GSMUA_Achr4P09860_001	Banana	plastid	49.58	53.64
KRH43792	Soybean	plastid	59.66	52.59
EER99115	Sorghum	plastid	48.74	51.33
Os09t0493600-01	Rice	plastid	47.06	49.78
TraesCS5D01G279000.1	Wheat	mitochondrion, plastid	46.22	48.89
TraesCS5A01G271400.1	Wheat	mitochondrion, plastid	46.22	48.46
TraesCS5B01G271700.1	Wheat	mitochondrion, plastid	45.8	48.44
Zm00001d020971_P002	Maize	plastid	47.06	47.46

Protein Annotations

Gene3D:3.30.460.10	MapMan:35.1	EntrezGene:820478	ProteinID:AEE75263.1	ArrayExpress:AT3G12930	EnsemblPlantsGene:AT3G12930
RefSeq:AT3G12930	TAIR:AT3G12930	RefSeq:AT3G12930-TAIR-G	EnsemblPlants:AT3G12930.1	TAIR:AT3G12930.1	EMBL:AY087920
EMBL:AY139986	Unigene:At.11983	ProteinID:BAB02500.1	EMBL:BT002591	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987
GO:GO:0017148	GO:GO:0019538	GO:GO:0043023	GO:GO:0090071	InterPro:Iojap/RsfS/C7orf30	HAMAP:MF_01477
RefSeq:NP_566439.1	PFAM:PF02410	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230	PO:PO:0000293
PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064
PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611
PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010
PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046
PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137
PO:PO:0025022	PANTHER:PTHR21043	PANTHER:PTHR21043:SF1	UniProt:Q9LDY9	SUPFAM:SSF81301	TIGRFAMs:TIGR00090
UniParc:UPI00000AC0D9	:	:	:	:	:

Description

IJProtein Iojap, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LDY9]

Coordinates

chr3:+:4128334..4129956

Molecular Weight (calculated)

26379.3 Da

IEP (calculated)

5.138

GRAVY (calculated)

-0.164

Length

238 amino acids

Sequence
(BLAST)

001: MASSTGLTVA GALLAGDFRL PAVSSLIPRK TSSSLSCLSN RDLSSPYNCC WRLSRGKILT SLSNSRKFAV GKEAEDGFLS NVSEDTDEMF DDLFNKYGKV
101: VFRSTDVKSP TAEVDDDAES LAFAVELAKV ASDVKAGDIK VLFVKPLVYW TRFFIIATAF SRPQIDAIGS RMRDLAEKKY GKVANGDVKP NSWTLLDFGD
201: VVIHLFLPPQ RTFYNLEDFY GNAMQIELPF EDQSQPRN

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.