Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 9
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY60119 | Canola | plastid | 97.89 | 97.89 |
| Bra034716.1-P | Field mustard | plastid | 94.94 | 94.94 |
| CDY24236 | Canola | plastid | 81.43 | 81.43 |
| AT3G12930.1 | Thale cress | plastid | 78.06 | 77.73 |
| CDY43388 | Canola | extracellular | 62.45 | 76.68 |
| KRH13673 | Soybean | plastid | 57.38 | 56.67 |
| VIT_19s0027g00700.t01 | Wine grape | plastid | 51.05 | 55.25 |
| GSMUA_Achr4P09860_001 | Banana | plastid | 49.79 | 53.64 |
| PGSC0003DMT400056899 | Potato | plastid | 50.63 | 51.5 |
| Solyc07g066460.2.1 | Tomato | plastid | 50.21 | 51.07 |
| KRH43792 | Soybean | plastid | 56.96 | 50.0 |
| EER99115 | Sorghum | plastid | 44.3 | 46.46 |
| TraesCS5A01G271400.1 | Wheat | mitochondrion, plastid | 44.3 | 46.26 |
| TraesCS5D01G279000.1 | Wheat | mitochondrion, plastid | 43.88 | 46.22 |
| Os09t0493600-01 | Rice | plastid | 43.04 | 45.33 |
| TraesCS5B01G271700.1 | Wheat | mitochondrion, plastid | 43.04 | 45.33 |
| Zm00001d020971_P002 | Maize | plastid | 42.19 | 42.37 |
Protein Annotations
| EnsemblPlants:CDY23554 | EnsemblPlantsGene:GSBRNA2T00023742001 | Gene3D:3.30.460.10 | HAMAP:MF_01477 | InterPro:Iojap/RsfS/C7orf30 | PANTHER:PTHR21043 |
| PANTHER:PTHR21043:SF1 | PFAM:PF02410 | ProteinID:CDY23554 | ProteinID:CDY23554.1 | SEG:seg | SUPFAM:SSF81301 |
| TIGRFAMs:TIGR00090 | UniParc:UPI0004EEFED5 | UniProt:A0A078GE21 | MapMan:35.1 | : | : |
Description
BnaC05g40400DBnaC05g40400D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GE21]
Coordinates
chrLK032145:+:32827..34402
Molecular Weight (calculated)
26100.9 Da
IEP (calculated)
4.819
GRAVY (calculated)
-0.216
Length
237 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSTVAGAP LTGGSRLTCW SSQIPRKLSS SSLLCLNNGD LSAPYNFPLR LSRGGRVQTT LSNSKSFAVG KEAEDGFLSD VSEDSDEMFD ELFNKYGKVV
101: YKSDDLKSPA AEVDDDAESL AFAVEMAKVA SEVKAGDIKV LFVKPLVYWT RFFILTTAFS RPQIDAIGSR MRDLAEKKYG RVANGDVKPN AWTLLDFGDV
201: VIHIFLPPQR TFYNLEDFYG NAMSVPLPFQ DEPPPRS
101: YKSDDLKSPA AEVDDDAESL AFAVEMAKVA SEVKAGDIKV LFVKPLVYWT RFFILTTAFS RPQIDAIGSR MRDLAEKKYG RVANGDVKPN AWTLLDFGDV
201: VIHIFLPPQR TFYNLEDFYG NAMSVPLPFQ DEPPPRS
001: MASSTGLTVA GALLAGDFRL PAVSSLIPRK TSSSLSCLSN RDLSSPYNCC WRLSRGKILT SLSNSRKFAV GKEAEDGFLS NVSEDTDEMF DDLFNKYGKV
101: VFRSTDVKSP TAEVDDDAES LAFAVELAKV ASDVKAGDIK VLFVKPLVYW TRFFIIATAF SRPQIDAIGS RMRDLAEKKY GKVANGDVKP NSWTLLDFGD
201: VVIHLFLPPQ RTFYNLEDFY GNAMQIELPF EDQSQPRN
101: VFRSTDVKSP TAEVDDDAES LAFAVELAKV ASDVKAGDIK VLFVKPLVYW TRFFIIATAF SRPQIDAIGS RMRDLAEKKY GKVANGDVKP NSWTLLDFGD
201: VVIHLFLPPQ RTFYNLEDFY GNAMQIELPF EDQSQPRN
Arabidopsis Description
IJProtein Iojap, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LDY9]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.