Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 10
- cytosol 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g071560.2.1 | Tomato | plastid | 95.88 | 93.68 |
| CDY14949 | Canola | cytosol | 49.41 | 73.04 |
| Os01t0963400-01 | Rice | cytosol | 47.65 | 66.39 |
| HORVU7Hr1G010470.2 | Barley | cytosol | 28.82 | 66.22 |
| VIT_18s0072g00400.t01 | Wine grape | plastid | 62.94 | 61.14 |
| AT1G43560.1 | Thale cress | plastid | 60.0 | 61.08 |
| AT1G76760.1 | Thale cress | plastid | 61.76 | 61.05 |
| Bra015721.1-P | Field mustard | plastid | 61.76 | 61.05 |
| CDX88314 | Canola | plastid | 61.18 | 60.47 |
| CDX87569 | Canola | plastid | 60.59 | 59.88 |
| HORVU2Hr1G087710.1 | Barley | cytosol | 28.82 | 59.76 |
| KRH35133 | Soybean | plastid | 60.0 | 58.29 |
| KRG91663 | Soybean | plastid | 59.41 | 57.71 |
| GSMUA_Achr6P25720_001 | Banana | plastid | 54.12 | 54.12 |
| EES02107 | Sorghum | plastid | 53.53 | 53.22 |
| Zm00001d042017_P002 | Maize | plastid | 51.18 | 52.1 |
| GSMUA_Achr1P13230_001 | Banana | extracellular | 41.18 | 51.85 |
| TraesCS3B01G577800.1 | Wheat | plastid | 48.82 | 50.61 |
| TraesCS3A01G509000.1 | Wheat | plastid | 48.82 | 50.3 |
| TraesCS3D01G516800.1 | Wheat | plastid | 48.82 | 50.3 |
| HORVU5Hr1G116290.1 | Barley | plastid | 34.71 | 42.45 |
| HORVU3Hr1G111930.2 | Barley | plastid | 48.82 | 40.1 |
| PGSC0003DMT400039743 | Potato | plastid | 27.06 | 25.7 |
| PGSC0003DMT400042164 | Potato | cytosol, plastid | 27.65 | 25.54 |
| PGSC0003DMT400032333 | Potato | cytosol, extracellular, mitochondrion, plastid | 24.71 | 23.08 |
| PGSC0003DMT400064434 | Potato | plastid | 25.29 | 22.99 |
| PGSC0003DMT400066596 | Potato | plastid | 23.53 | 22.22 |
| PGSC0003DMT400055831 | Potato | mitochondrion, plastid | 20.0 | 18.58 |
Protein Annotations
| MapMan:10.5.8 | EntrezGene:102584454 | Gene3D:3.40.30.10 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005575 | GO:GO:0005623 | GO:GO:0006662 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0015035 | GO:GO:0019725 | GO:GO:0045454 | GO:GO:0055114 | InterPro:IPR013766 | UniProt:M1C888 |
| PFAM:PF00085 | EnsemblPlantsGene:PGSC0003DMG400024095 | PGSC:PGSC0003DMG400024095 | EnsemblPlants:PGSC0003DMT400061915 | PRINTS:PR00421 | ScanProsite:PS00194 |
| PFscan:PS51352 | PANTHER:PTHR10438 | PANTHER:PTHR10438:SF280 | SUPFAM:SSF52833 | TIGRFAMs:TIGR01068 | InterPro:Thioredoxin |
| InterPro:Thioredoxin-like_sf | InterPro:Thioredoxin_CS | InterPro:Thioredoxin_domain | UniParc:UPI000296DBB5 | RefSeq:XP_006359806.1 | : |
Description
Thioredoxin Y1, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400024095]
Coordinates
chr4:+:60129640..60133197
Molecular Weight (calculated)
18913.9 Da
IEP (calculated)
8.464
GRAVY (calculated)
-0.151
Length
170 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFSIAATGA GALASPSANC CSSTKFSYLA SLQFPRELRR AQIRNYGLKS KKGSSRLVPL VEAKKQTFTS FEDLLENSEK PLLVDFYATW CGPCQFMVPI
101: LNEVGESMKD KIQVVKIDTE KYPALADKYK IQALPTFILF KDGDVCDRFE GALNAPQLMQ RIESALEVKQ
101: LNEVGESMKD KIQVVKIDTE KYPALADKYK IQALPTFILF KDGDVCDRFE GALNAPQLMQ RIESALEVKQ
001: MASISLSSST VPSLNSKESS GVSAFASRSI SAVKFQFPVR RVRTGDLKFP SLSSTTRCTP RRIEAKKQTF DSFEDLLVNS DKPVLVDYYA TWCGPCQFMV
101: PILNEVSETL KDKIQVVKID TEKYPSIANK YKIEALPTFI LFKDGEPCDR FEGALTAKQL IQRIEDSLKV KP
101: PILNEVSETL KDKIQVVKID TEKYPSIANK YKIEALPTFI LFKDGEPCDR FEGALTAKQL IQRIEDSLKV KP
Arabidopsis Description
ATY1TY1 [Source:UniProtKB/TrEMBL;Acc:A0A178WE50]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.