Factsheet for PGSC0003DMT400083137

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

plastid 3
mitochondrion 8

Predictors

GFP

MS/MS

Papers

cytosol: 22313117
extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g071000.2.1	Tomato	plastid	98.92	98.92
CDY30724	Canola	cytosol	21.3	80.82
VIT_17s0000g05800.t01	Wine grape	mitochondrion	79.42	80.59
KRH56945	Soybean	endoplasmic reticulum, plasma membrane	76.9	78.6
KRH56948	Soybean	mitochondrion	78.52	78.52
EES19875	Sorghum	mitochondrion	77.44	78.14
Bra010097.1-P	Field mustard	mitochondrion	76.35	77.33
CDY00303	Canola	mitochondrion	76.35	77.33
CDY61347	Canola	mitochondrion	76.35	77.19
TraesCS1D01G362700.1	Wheat	extracellular, golgi	76.71	77.13
AT5G62530.1	Thale cress	mitochondrion	77.26	76.98
TraesCS1B01G374500.1	Wheat	mitochondrion	76.53	76.95
TraesCS1A01G357900.1	Wheat	mitochondrion	76.17	76.59
KRH03440	Soybean	mitochondrion	78.34	76.54
HORVU1Hr1G080320.1	Barley	mitochondrion	75.63	76.04
Os05t0536400-01	Rice	mitochondrion	75.09	75.64
GSMUA_AchrUn_...	Banana	mitochondrion	74.73	74.86
KRH03438	Soybean	mitochondrion	29.06	71.88
Zm00001d038841_P007	Maize	mitochondrion	73.29	71.73
KRG90372	Soybean	cytosol, golgi, peroxisome	21.3	71.52
CDY66231	Canola	nucleus	18.23	63.12
CDY30725	Canola	mitochondrion	42.24	60.31
Bra029253.1-P	Field mustard	nucleus	18.05	59.88

Protein Annotations

Gene3D:3.40.309.10	Gene3D:3.40.605.10	MapMan:4.2.3.2	InterPro:Ald_DH/histidinol_DH	InterPro:Ald_DH_C	InterPro:Ald_DH_N
InterPro:Aldehyde_DH_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0003842	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009507	GO:GO:0009536	GO:GO:0009628
GO:GO:0009651	GO:GO:0009987	GO:GO:0010133	GO:GO:0016491	GO:GO:0016620	GO:GO:0050897
GO:GO:0055114	GO:GO:0072593	InterPro:IPR016162	InterPro:IPR016163	UniProt:M1D6K2	PFAM:PF00171
EnsemblPlantsGene:PGSC0003DMG400033072	PGSC:PGSC0003DMG400033072	EnsemblPlants:PGSC0003DMT400083137	PANTHER:PTHR43521	PANTHER:PTHR43521:SF2	SUPFAM:SSF53720
UniParc:UPI000294F0CC	:	:	:	:	:

Description

P5CDH1 [Source:PGSC_GENE;Acc:PGSC0003DMG400033072]

Coordinates

chr6:+:51835999..51843555

Molecular Weight (calculated)

61461.2 Da

IEP (calculated)

7.267

GRAVY (calculated)

-0.118

Length

554 amino acids

Sequence
(BLAST)

001: MYRLSAYRQL KNRASSSHLN WITLFNSTRS NHTLSFATVK AEEVSGSQPA EVHNLVQGKW TKSSSWNTIL DPLNGQPFIK VAEVNESELQ PFVESLSKCP
101: KHGLHNPFKA PERYLMLGDV STKAAHALGL PEVSDFFAKL IQRVSPKSYQ QALIEVLVTQ KFLENFCGDQ VRFLARSFAV PGNHLGQQSH GFRWPYGPVA
201: VIAPFNFPLE IPLLQLMGAL YMGNKPVLKV DSKVCIVMEQ MLRLLHECGL PVDDVDFINS DGKTMNKLLV EAKPRMTLFT GSSRVAEKLA DDLSGRVKLE
301: DAGFDWKILG PDVNEVDYVA WVCDQDAYAC SGQKCSAESI LFMHENWSKS SLIDKMTELA ARRKLDDLTI GPVLTVTTET MLDHAKKLLQ IPGSRLLFGG
401: EALQNHSIPK IYGAIKPTAI FVPLEEILKD EHYPLVTKEI FGPFQVVTEY KDNQLPLVLD ALEKMHAHLT AAVVSNDILF LQKVIGNSVN GTTYAGLRAR
501: TTGAPQNHWF GPAGDPRGAG IGTPEAIKLV WSCHREIIYD VGPMPLGWKV PAST

Best Arabidopsis Sequence Match ( AT5G62530.1 )
(BLAST)

001: MYRVFASRAL RAKSLCDKSS TSLASLTLSR LNHSIPFATV DAEELSGAHP AEVQSFVQGK WIGSSNHNTL LDPLNGEPFI KVAEVDESGT QPFVDSLSQC
101: PKHGLHNPFK SPERYLLYGD ISTKAAHMLA LPKVADFFAR LIQRVAPKSY QQAAGEVFVT RKFLENFCGD QVRFLARSFA IPGNHLGQQS HGYRWPYGPV
201: TIVTPFNFPL EIPLLQLMGA LYMGNKPLLK VDSKVSIVME QMMRLLHYCG LPAEDVDFIN SDGKTMNKIL LEANPRMTLF TGSSRVAEKL ALDLKGRIRL
301: EDAGFDWKVL GPDVQEVDYV AWQCDQDAYA CSGQKCSAQS MLFVHENWSK TPLVSKLKEL AERRKLEDLT IGPVLTFTTE AMLEHMENLL QIPGSKLLFG
401: GKELKNHSIP SIYGALEPTA VYVPIEEILK DNKTYELVTK EIFGPFQIVT EYKKDQLPLV LEALERMHAH LTAAVVSNDP IFLQEVIGNS VNGTTYAGLR
501: GRTTGAPQNH WFGPAGDPRG AGIGTPEAIK LVWSCHREVI YDYGPVPQGW ELPPST

Arabidopsis Description

ALDH12A1Delta-1-pyrroline-5-carboxylate dehydrogenase 12A1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8VZC3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.