Factsheet for TraesCS1D01G362700.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

extracellular: 19786127
golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 19786127 doi

FJ Kong, A Oyanagi, S Komatsu

National Institute of Crop Science, Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G374500.1	Wheat	mitochondrion	98.91	98.91
TraesCS1A01G357900.1	Wheat	mitochondrion	98.37	98.37
HORVU1Hr1G080320.1	Barley	mitochondrion	98.0	98.0
Os05t0536400-01	Rice	mitochondrion	89.84	90.0
EES19875	Sorghum	mitochondrion	88.93	89.25
Zm00001d038841_P007	Maize	mitochondrion	83.85	81.63
CDY30724	Canola	cytosol	20.51	77.4
Solyc06g071000.2.1	Tomato	plastid	77.31	76.9
PGSC0003DMT400083137	Potato	cytosol, extracellular	77.13	76.71
KRH56948	Soybean	mitochondrion	76.77	76.35
VIT_17s0000g05800.t01	Wine grape	mitochondrion	75.5	76.19
GSMUA_AchrUn_...	Banana	mitochondrion	76.41	76.13
KRH56945	Soybean	endoplasmic reticulum, plasma membrane	74.77	76.01
AT5G62530.1	Thale cress	mitochondrion	76.22	75.54
Bra010097.1-P	Field mustard	mitochondrion	74.77	75.32
CDY00303	Canola	mitochondrion	74.77	75.32
CDY61347	Canola	mitochondrion	74.77	75.18
KRH03440	Soybean	mitochondrion	76.59	74.43
KRG90372	Soybean	cytosol, golgi, peroxisome	20.87	69.7
KRH03438	Soybean	mitochondrion	26.68	65.62
CDY66231	Canola	nucleus	17.42	60.0
CDY30725	Canola	mitochondrion	41.02	58.25
Bra029253.1-P	Field mustard	nucleus	17.24	56.89

Protein Annotations

Gene3D:3.40.309.10	Gene3D:3.40.605.10	MapMan:4.2.3.2	InterPro:Ald_DH/histidinol_DH	InterPro:Ald_DH_C	InterPro:Ald_DH_CS_CYS
InterPro:Ald_DH_N	InterPro:Aldehyde_DH_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0016620	GO:GO:0055114	InterPro:IPR016162	InterPro:IPR016163	PFAM:PF00171
ScanProsite:PS00070	PANTHER:PTHR43521	PANTHER:PTHR43521:SF2	SUPFAM:SSF53720	EnsemblPlantsGene:TraesCS1D01G362700	EnsemblPlants:TraesCS1D01G362700.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1D:-:444855161..444861828

Molecular Weight (calculated)

61003.0 Da

IEP (calculated)

7.584

GRAVY (calculated)

-0.080

Length

551 amino acids

Sequence
(BLAST)

001: MSRLVSRRHL AAAAALRRSP AAFASRWLHT PAFATVSPEE ISGSSPAEVQ NFVQGKWIKS ANWNWIVDPL NGEKFIKVAE VQGSEIKPFV ESLSKCPKHG
101: LHNPLRAPER YLMYGDISTK AAHMLGQPEV LDFFAKLVQR VSPKSYQQAL LEVQVSQKFL ENFCGDQVRF LARSFAVPGN HVGQMSNGYR WPFGPVAIIT
201: PFNFPLEIPL LQLMGALYMG NKPVLKVDSK VSIVMEQMIR LLHECGLPAE DVDFINSDGI TMNKLLLEAN PKMTLFTGSS RVAEKLAADL QGRIKLEDAG
301: FDWKILGPDV QEVDYISWVC DQDAYACSGQ KCSAQSMLFM HKNWSSSGLL EKMKKLSERR KLEDLTIGPV LTVTTATMIE HMNNLLKIPG SKVLFGGEPL
401: GNHSIPEIYG AIKPTAVFVP LVEILKSDNF ELVTKEIFGP FQVVTEYSED QLELVLEACE RMNAHLTAAV VSNDKLFLQE VLGRSVNGTT YAGIRARTTG
501: APQNHWFGPA GDPRGAGIGT PEAIKLVWSC HREIIYDIGP LPKKWALPAA T

Best Arabidopsis Sequence Match ( AT5G62530.1 )
(BLAST)

001: MYRVFASRAL RAKSLCDKSS TSLASLTLSR LNHSIPFATV DAEELSGAHP AEVQSFVQGK WIGSSNHNTL LDPLNGEPFI KVAEVDESGT QPFVDSLSQC
101: PKHGLHNPFK SPERYLLYGD ISTKAAHMLA LPKVADFFAR LIQRVAPKSY QQAAGEVFVT RKFLENFCGD QVRFLARSFA IPGNHLGQQS HGYRWPYGPV
201: TIVTPFNFPL EIPLLQLMGA LYMGNKPLLK VDSKVSIVME QMMRLLHYCG LPAEDVDFIN SDGKTMNKIL LEANPRMTLF TGSSRVAEKL ALDLKGRIRL
301: EDAGFDWKVL GPDVQEVDYV AWQCDQDAYA CSGQKCSAQS MLFVHENWSK TPLVSKLKEL AERRKLEDLT IGPVLTFTTE AMLEHMENLL QIPGSKLLFG
401: GKELKNHSIP SIYGALEPTA VYVPIEEILK DNKTYELVTK EIFGPFQIVT EYKKDQLPLV LEALERMHAH LTAAVVSNDP IFLQEVIGNS VNGTTYAGLR
501: GRTTGAPQNH WFGPAGDPRG AGIGTPEAIK LVWSCHREVI YDYGPVPQGW ELPPST

Arabidopsis Description

ALDH12A1Delta-1-pyrroline-5-carboxylate dehydrogenase 12A1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8VZC3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.