CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 8

Predictors

GFP

MS/MS

Papers

mitochondrion: 27780359

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03438	Soybean	mitochondrion	37.55	92.86
KRH03440	Soybean	mitochondrion	91.7	89.59
KRH56945	Soybean	endoplasmic reticulum, plasma membrane	87.55	89.48
VIT_17s0000g05800.t01	Wine grape	mitochondrion	79.96	81.14
KRG90372	Soybean	cytosol, golgi, peroxisome	23.83	80.0
Bra010097.1-P	Field mustard	mitochondrion	77.98	78.98
CDY00303	Canola	mitochondrion	77.8	78.79
CDY61347	Canola	mitochondrion	77.8	78.65
PGSC0003DMT400083137	Potato	cytosol, extracellular	78.52	78.52
Solyc06g071000.2.1	Tomato	plastid	78.52	78.52
AT5G62530.1	Thale cress	mitochondrion	78.34	78.06
EES19875	Sorghum	mitochondrion	77.26	77.96
TraesCS1B01G374500.1	Wheat	mitochondrion	76.35	76.77
TraesCS1D01G362700.1	Wheat	extracellular, golgi	76.35	76.77
CDY30724	Canola	cytosol	20.22	76.71
TraesCS1A01G357900.1	Wheat	mitochondrion	75.99	76.41
Os05t0536400-01	Rice	mitochondrion	75.63	76.18
HORVU1Hr1G080320.1	Barley	mitochondrion	75.63	76.04
GSMUA_AchrUn_...	Banana	mitochondrion	74.19	74.32
Zm00001d038841_P007	Maize	mitochondrion	72.74	71.2
CDY66231	Canola	nucleus	19.13	66.25
Bra029253.1-P	Field mustard	nucleus	18.95	62.87
CDY30725	Canola	mitochondrion	43.68	62.37

Protein Annotations

EntrezGene:100813821	Gene3D:3.40.309.10	Gene3D:3.40.605.10	MapMan:4.2.3.2	EMBL:ACUP02002803	InterPro:Ald_DH/histidinol_DH
InterPro:Ald_DH_C	InterPro:Ald_DH_CS_CYS	InterPro:Ald_DH_N	InterPro:Aldehyde_DH_dom	EnsemblPlantsGene:GLYMA_05G029200	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016620	GO:GO:0055114
UniProt:I1JZR6	InterPro:IPR016162	InterPro:IPR016163	EnsemblPlants:KRH56948	ProteinID:KRH56948	ProteinID:KRH56948.1
PFAM:PF00171	ScanProsite:PS00070	PANTHER:PTHR43521	PANTHER:PTHR43521:SF2	SUPFAM:SSF53720	UniParc:UPI00023BF46E
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:2510682..2517754

Molecular Weight (calculated)

61442.0 Da

IEP (calculated)

7.591

GRAVY (calculated)

-0.142

Length

554 amino acids

Sequence
(BLAST)

001: MFMFLVSRVT KDSISRNRNA FASFAFSSRC AHSLSFATVE AEEISGSRPA EVLNLVQGKW VGSSNWNTIA DPLNGDSFIK VAEVDETGIQ PFIKSLSSCP
101: KHGVHNPFKA PERYLMYGDI STKAAHMLSL PKVSDFFTKL IQRVSPKSYQ QAFGEVYVTQ KFLENFCGDQ VRFLARSFGV PGNHLGQQSH GFRWPYGPVA
201: IITPFNFPLE IPVLQLMGAL YMGNKPVLKV DSKVSIVMEQ MLRLLHTCGL PAEDVDFINS DGKTMNRLLL EANPRMTLFT GSSRVADKLA VDLKGRVKLE
301: DAGFDWKILG PDVHQEDYIA WVCDQDAYAC SGQKCSAQSL LFMHENWSKT SLLSKLKDLA ERRKLEDLTI GPVLTCTTGM MLEHKNKLLE IPGSKLLFGG
401: SPLENHSIPP IYGAIKPTAV YVPLEEIMKD KNFDLVTKEI FGPFQVITDY KNSQLSVVLD AVERMHNHLT AAVVSNDPLF LQEVVGNSVN GTTYAGLRAR
501: TTGAPQNHWF GPAGDARGAG IGTPEAIKLV WSCHREVIYD FGPVPKDWKT PQST

Best Arabidopsis Sequence Match ( AT5G62530.1 )
(BLAST)

001: MYRVFASRAL RAKSLCDKSS TSLASLTLSR LNHSIPFATV DAEELSGAHP AEVQSFVQGK WIGSSNHNTL LDPLNGEPFI KVAEVDESGT QPFVDSLSQC
101: PKHGLHNPFK SPERYLLYGD ISTKAAHMLA LPKVADFFAR LIQRVAPKSY QQAAGEVFVT RKFLENFCGD QVRFLARSFA IPGNHLGQQS HGYRWPYGPV
201: TIVTPFNFPL EIPLLQLMGA LYMGNKPLLK VDSKVSIVME QMMRLLHYCG LPAEDVDFIN SDGKTMNKIL LEANPRMTLF TGSSRVAEKL ALDLKGRIRL
301: EDAGFDWKVL GPDVQEVDYV AWQCDQDAYA CSGQKCSAQS MLFVHENWSK TPLVSKLKEL AERRKLEDLT IGPVLTFTTE AMLEHMENLL QIPGSKLLFG
401: GKELKNHSIP SIYGALEPTA VYVPIEEILK DNKTYELVTK EIFGPFQIVT EYKKDQLPLV LEALERMHAH LTAAVVSNDP IFLQEVIGNS VNGTTYAGLR
501: GRTTGAPQNH WFGPAGDPRG AGIGTPEAIK LVWSCHREVI YDYGPVPQGW ELPPST

Arabidopsis Description

ALDH12A1Delta-1-pyrroline-5-carboxylate dehydrogenase 12A1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8VZC3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.