Factsheet for Solyc06g071000.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 8

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 25464976
plastid: 26371478
unclear: 26455813

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400083137	Potato	cytosol, extracellular	98.92	98.92
CDY30724	Canola	cytosol	21.3	80.82
VIT_17s0000g05800.t01	Wine grape	mitochondrion	79.24	80.4
KRH56945	Soybean	endoplasmic reticulum, plasma membrane	77.08	78.78
KRH56948	Soybean	mitochondrion	78.52	78.52
EES19875	Sorghum	mitochondrion	77.62	78.32
Bra010097.1-P	Field mustard	mitochondrion	76.53	77.51
CDY00303	Canola	mitochondrion	76.53	77.51
CDY61347	Canola	mitochondrion	76.53	77.37
TraesCS1D01G362700.1	Wheat	extracellular, golgi	76.9	77.31
TraesCS1B01G374500.1	Wheat	mitochondrion	76.71	77.13
AT5G62530.1	Thale cress	mitochondrion	77.26	76.98
TraesCS1A01G357900.1	Wheat	mitochondrion	76.35	76.77
KRH03440	Soybean	mitochondrion	78.52	76.72
HORVU1Hr1G080320.1	Barley	mitochondrion	75.81	76.22
Os05t0536400-01	Rice	mitochondrion	75.27	75.82
GSMUA_AchrUn_...	Banana	mitochondrion	74.91	75.05
KRG90372	Soybean	cytosol, golgi, peroxisome	21.48	72.12
Zm00001d038841_P007	Maize	mitochondrion	73.29	71.73
KRH03438	Soybean	mitochondrion	28.88	71.43
CDY66231	Canola	nucleus	18.23	63.12
CDY30725	Canola	mitochondrion	42.24	60.31
Bra029253.1-P	Field mustard	nucleus	18.05	59.88

Protein Annotations

Gene3D:3.40.309.10	Gene3D:3.40.605.10	MapMan:4.2.3.2	InterPro:Ald_DH/histidinol_DH	InterPro:Ald_DH_C	InterPro:Ald_DH_N
InterPro:Aldehyde_DH_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0003842	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009507	GO:GO:0009536	GO:GO:0009628
GO:GO:0009651	GO:GO:0009987	GO:GO:0010133	GO:GO:0016491	GO:GO:0016620	GO:GO:0050897
GO:GO:0055114	GO:GO:0072593	InterPro:IPR016162	InterPro:IPR016163	UniProt:K4C8H3	PFAM:PF00171
PANTHER:PTHR43521	PANTHER:PTHR43521:SF2	SUPFAM:SSF53720	EnsemblPlantsGene:Solyc06g071000.2	EnsemblPlants:Solyc06g071000.2.1	UniParc:UPI0002766D3B

Description

Delta-1-pyrroline-5-carboxylate dehydrogenase 12A1, mitochondrial [Source:Projected from Arabidopsis thaliana (AT5G62530) UniProtKB/Swiss-Prot;Acc:Q8VZC3]

Coordinates

chr6:+:43613345..43619811

Molecular Weight (calculated)

61517.3 Da

IEP (calculated)

7.267

GRAVY (calculated)

-0.126

Length

554 amino acids

Sequence
(BLAST)

001: MYRLSAYRQL QKRASSSHLN WITLFDSRRS NHTLSFATVK AEEVSGSQPA EVHNLVQGKW TKSSSWNTIL DPLNGQPFIK VAEVNESELQ PFVESLSKCP
101: KHGLHNPFKA PERYLMLGDV STKAAHALGL PEVSDFFAKL IQRVSPKSYQ QALVEVLVTQ KFLENFCGDQ VRFLARSFAV PGNHLGQQSH GFRWPYGPVA
201: VIAPFNFPLE IPLLQLMGAL YMGNKPVLKV DSKVCIVMEQ MLRLLHECGL PVDDVDFINS DGKTMNKLLV EAKPRMTLFT GSSRVAEKLA DDLSGRVKLE
301: DAGFDWKILG PDVNEVDYVA WVCDQDAYAC SGQKCSAESI LFMHENWSKS SLLDKMTELA ARRKLDDLTI GPVLTVTTET MLDHAKKLLQ IPGSRLLFGG
401: EALQNHSIPK IYGAIKPTAI FVPLEEILKD EHYPLVTKEI FGPFQVVTEY KDNQLPLVLD ALEKMHAHLT AAVVSNDILF LQKVIGNSVN GTTYAGLRAR
501: TTGAPQNHWF GPAGDPRGAG IGTPEAIKLV WSCHREIIYD VGPMPLGWKV PAST

Best Arabidopsis Sequence Match ( AT5G62530.1 )
(BLAST)

001: MYRVFASRAL RAKSLCDKSS TSLASLTLSR LNHSIPFATV DAEELSGAHP AEVQSFVQGK WIGSSNHNTL LDPLNGEPFI KVAEVDESGT QPFVDSLSQC
101: PKHGLHNPFK SPERYLLYGD ISTKAAHMLA LPKVADFFAR LIQRVAPKSY QQAAGEVFVT RKFLENFCGD QVRFLARSFA IPGNHLGQQS HGYRWPYGPV
201: TIVTPFNFPL EIPLLQLMGA LYMGNKPLLK VDSKVSIVME QMMRLLHYCG LPAEDVDFIN SDGKTMNKIL LEANPRMTLF TGSSRVAEKL ALDLKGRIRL
301: EDAGFDWKVL GPDVQEVDYV AWQCDQDAYA CSGQKCSAQS MLFVHENWSK TPLVSKLKEL AERRKLEDLT IGPVLTFTTE AMLEHMENLL QIPGSKLLFG
401: GKELKNHSIP SIYGALEPTA VYVPIEEILK DNKTYELVTK EIFGPFQIVT EYKKDQLPLV LEALERMHAH LTAAVVSNDP IFLQEVIGNS VNGTTYAGLR
501: GRTTGAPQNH WFGPAGDPRG AGIGTPEAIK LVWSCHREVI YDYGPVPQGW ELPPST

Arabidopsis Description

ALDH12A1Delta-1-pyrroline-5-carboxylate dehydrogenase 12A1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8VZC3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.