Factsheet for PGSC0003DMT400066596

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g108020.2.1	Tomato	plastid	95.56	95.56
GSMUA_Achr11P...	Banana	cytosol	24.44	60.27
GSMUA_Achr3P02940_001	Banana	extracellular	35.56	55.65
VIT_03s0063g00280.t01	Wine grape	plastid	50.56	52.91
CDX68513	Canola	plastid	48.89	51.46
Bra015223.1-P	Field mustard	plastid	48.33	50.88
CDY36637	Canola	plastid	48.33	50.88
AT2G15570.2	Thale cress	plastid	47.78	49.43
KRH50300	Soybean	plastid	44.44	45.98
KRH70646	Soybean	plastid	42.22	44.97
Os04t0430800-01	Rice	plastid	41.11	42.29
HORVU2Hr1G075240.6	Barley	plastid	40.56	39.67
EES12176	Sorghum	plastid	41.67	39.27
Zm00001d003667_P002	Maize	plastid	40.56	38.83
PGSC0003DMT400032333	Potato	cytosol, extracellular, mitochondrion, plastid	35.56	35.16
TraesCS2A01G303200.1	Wheat	plastid	40.56	34.11
PGSC0003DMT400064434	Potato	plastid	34.44	33.16
PGSC0003DMT400039743	Potato	plastid	31.11	31.28
TraesCS2D01G301800.1	Wheat	plastid	41.11	30.33
PGSC0003DMT400055831	Potato	mitochondrion, plastid	30.56	30.05
PGSC0003DMT400042164	Potato	cytosol, plastid	24.44	23.91
PGSC0003DMT400061915	Potato	cytosol, plastid	22.22	23.53

Protein Annotations

MapMan:10.5.5	EntrezGene:102589431	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005623	GO:GO:0006662	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015035
GO:GO:0019725	GO:GO:0045454	GO:GO:0055114	InterPro:IPR013766	UniProt:M1CFU9	PFAM:PF00085
EnsemblPlantsGene:PGSC0003DMG400025887	PGSC:PGSC0003DMG400025887	EnsemblPlants:PGSC0003DMT400066596	PRINTS:PR00421	ScanProsite:PS00194	PFscan:PS51352
PANTHER:PTHR10438	PANTHER:PTHR10438:SF233	SUPFAM:SSF52833	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS
InterPro:Thioredoxin_domain	UniParc:UPI000295565A	RefSeq:XP_006346404.1	SEG:seg	:	:

Description

Thioredoxin M3, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400025887]

Coordinates

chr1:-:84401258..84405639

Molecular Weight (calculated)

20009.9 Da

IEP (calculated)

8.270

GRAVY (calculated)

-0.159

Length

180 amino acids

Sequence
(BLAST)

001: MAASASCATP YSNAPSSLSR SLSLQYREFC NLPYKCKQHQ NVRIGLSVEN NKGFGTWKTS SPSSLRVFCL RDTQAAAVTA KSWDKLILSS DTPVLVEFHA
101: TWCGPCQMVH RVIDEIAGEY SGRLKCYVLD ADREPKVAEN YDIKAVPVVL LFKNGEKFES VIGTMPKEFY VSAIERLLSS

Best Arabidopsis Sequence Match ( AT2G15570.1 )
(BLAST)

001: MAISSSSSSI CFNPTRFHTA RHISSPSRLF PVTSFSPRSL RFSDRRSLLS SSASRLRLSP LCVRDSRAAE VTQRSWEDSV LKSETPVLVE FYTSWCGPCR
101: MVHRIIDEIA GDYAGKLNCY LLNADNDLPV AEEYEIKAVP VVLLFKNGEK RESIMGTMPK EFYISAIERV LNS

Arabidopsis Description

ATHM3Thioredoxin superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IIH6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.