CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH50300	Soybean	plastid	92.31	89.66
VIT_03s0063g00280.t01	Wine grape	plastid	53.25	52.33
GSMUA_Achr11P...	Banana	cytosol	21.89	50.68
GSMUA_Achr3P02940_001	Banana	extracellular	33.73	49.57
Bra015223.1-P	Field mustard	plastid	48.52	47.95
CDX68513	Canola	plastid	48.52	47.95
CDY36637	Canola	plastid	47.93	47.37
AT2G15570.2	Thale cress	plastid	48.52	47.13
PGSC0003DMT400066596	Potato	plastid	44.97	42.22
Solyc01g108020.2.1	Tomato	plastid	44.38	41.67
KRH18101	Soybean	plastid	20.71	36.84
Os04t0430800-01	Rice	plastid	36.09	34.86
KRH55312	Soybean	nucleus, plastid	33.73	33.73
KRH26086	Soybean	plastid	34.91	33.71
KRH22105	Soybean	plastid	36.09	33.52
KRH27229	Soybean	plastid	35.5	32.97
HORVU2Hr1G075240.6	Barley	plastid	34.91	32.07
Zm00001d003667_P002	Maize	plastid	35.5	31.91
KRH53365	Soybean	plastid	33.73	31.49
EES12176	Sorghum	plastid	35.5	31.41
KRH64566	Soybean	plastid	31.95	29.83
KRH15927	Soybean	plastid	21.3	28.35
TraesCS2A01G303200.1	Wheat	plastid	34.91	27.57
TraesCS2D01G301800.1	Wheat	plastid	35.5	24.59
KRG91663	Soybean	plastid	24.85	24.0
KRH35133	Soybean	plastid	24.26	23.43
KRG90625	Soybean	plastid	20.71	19.34
KRH36129	Soybean	plastid	20.12	19.32

Protein Annotations

MapMan:10.5.5	EntrezGene:100500413	Gene3D:3.40.30.10	EMBL:ACUP02000786	EMBL:BT091344	UniProt:C6T1N8
EnsemblPlantsGene:GLYMA_02G102400	GO:GO:0003674	GO:GO:0003824	GO:GO:0004791	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006662	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0015035	GO:GO:0016671	GO:GO:0019725	GO:GO:0034599	GO:GO:0045454
GO:GO:0047134	GO:GO:0055114	GO:GO:0098869	InterPro:IPR013766	EnsemblPlants:KRH70646	ProteinID:KRH70646
ProteinID:KRH70646.1	PFAM:PF00085	ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF233
SUPFAM:SSF52833	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI0001B15996
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:9687071..9689680

Molecular Weight (calculated)

18948.2 Da

IEP (calculated)

8.635

GRAVY (calculated)

-0.082

Length

169 amino acids

Sequence
(BLAST)

001: MASFSITSSP PTLHKATITD PSSSSSHAFP HRSPFVLRMP HQPHRPQTPL VLPKIQSLRN ETRAIPVTKD LWDNSILKSE IPVLVIFYAN WCGPCRMVHR
101: IIDEIATEYA GKLKCFIVNT DTDMQIAEDY EIKAVPVVLM FKNGKKCDSV IGTMPKEFYV AAIEGVLKP

Best Arabidopsis Sequence Match ( AT2G15570.1 )
(BLAST)

001: MAISSSSSSI CFNPTRFHTA RHISSPSRLF PVTSFSPRSL RFSDRRSLLS SSASRLRLSP LCVRDSRAAE VTQRSWEDSV LKSETPVLVE FYTSWCGPCR
101: MVHRIIDEIA GDYAGKLNCY LLNADNDLPV AEEYEIKAVP VVLLFKNGEK RESIMGTMPK EFYISAIERV LNS

Arabidopsis Description

ATHM3Thioredoxin superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IIH6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.