CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 9
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93305
KRH23958
KRH39841
KRH56614

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G15360.1	KRG93305	AT3G27960.1	21798944
AT3G15360.1	KRH56614	AT3G27960.1	21798944
AT3G15360.1	KRH23958	AT4G25200.1	21798944
AT3G15360.1	KRH39841	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH26086	Soybean	plastid	95.86	92.57
VIT_00s0238g00110.t01	Wine grape	cytosol	34.91	83.1
KRH27229	Soybean	plastid	78.11	72.53
KRH22105	Soybean	plastid	76.92	71.43
VIT_19s0014g02890.t01	Wine grape	plastid	69.82	62.77
Solyc07g063190.2.1	Tomato	plastid	62.72	58.24
PGSC0003DMT400032333	Potato	cytosol, extracellular, mitochondrion, plastid	62.13	57.69
HORVU2Hr1G091130.1	Barley	mitochondrion	47.93	57.04
GSMUA_Achr1P00150_001	Banana	plastid	60.35	54.26
PGSC0003DMT400039743	Potato	plastid	56.8	53.63
Solyc12g013810.1.1	Tomato	plastid	56.21	53.07
KRH18101	Soybean	plastid	29.59	52.63
Zm00001d051250_P001	Maize	plastid	53.25	52.02
Zm00001d017379_P001	Maize	plastid	53.25	52.02
Os02t0639900-01	Rice	plastid	53.25	52.02
PGSC0003DMT400064434	Potato	plastid	56.8	51.34
Solyc10g006970.2.1	Tomato	plastid	56.21	50.8
EES07212	Sorghum	plastid	51.48	50.0
TraesCS2D01G368700.1	Wheat	plastid	52.66	48.9
CDX97662	Canola	plastid	55.03	48.44
TraesCS2A01G372500.1	Wheat	plastid	52.66	48.37
GSMUA_Achr11P...	Banana	plastid	52.07	48.35
AT3G15360.1	Thale cress	plastid	55.03	48.19
TraesCS2B01G389500.1	Wheat	plastid	52.66	48.11
Bra027250.1-P	Field mustard	plastid	54.44	47.92
CDX98554	Canola	plastid	54.44	47.92
Bra001592.1-P	Field mustard	extracellular, plasma membrane	46.15	47.85
Zm00001d002854_P001	Maize	plastid	51.48	47.8
KRH64566	Soybean	plastid	50.89	47.51
Os04t0530600-01	Rice	plastid	50.3	47.22
KRH53365	Soybean	plastid	50.3	46.96
GSMUA_Achr5P20730_001	Banana	plastid	52.66	46.84
EES12552	Sorghum	plastid	49.7	45.16
HORVU2Hr1G091200.5	Barley	cytosol	47.93	43.78
GSMUA_Achr5P12100_001	Banana	plastid	61.54	42.28
GSMUA_Achr4P29990_001	Banana	plastid	56.21	40.08
CDX82437	Canola	endoplasmic reticulum	29.59	39.68
CDX75826	Canola	endoplasmic reticulum	29.59	39.37
KRH15927	Soybean	plastid	28.99	38.58
KRH70646	Soybean	plastid	33.73	33.73
KRH50300	Soybean	plastid	34.32	33.33
KRG91663	Soybean	plastid	26.63	25.71
KRH35133	Soybean	plastid	24.85	24.0
KRH36129	Soybean	plastid	24.85	23.86
KRG90625	Soybean	plastid	25.44	23.76

Protein Annotations

MapMan:10.5.5	EntrezGene:100802971	Gene3D:3.40.30.10	EMBL:ACUP02003954	EnsemblPlantsGene:GLYMA_06G245200	GO:GO:0003674
GO:GO:0003824	GO:GO:0004791	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006662	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015035
GO:GO:0016671	GO:GO:0019725	GO:GO:0034599	GO:GO:0045454	GO:GO:0047134	GO:GO:0055114
GO:GO:0098869	UniProt:I1KDX9	InterPro:IPR013766	EnsemblPlants:KRH55312	ProteinID:KRH55312	ProteinID:KRH55312.1
PFAM:PF00085	PRINTS:PR00421	ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF367
SUPFAM:SSF52833	TIGRFAMs:TIGR01068	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain
UniParc:UPI0001BA86BD	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:41415288..41418537

Molecular Weight (calculated)

18373.4 Da

IEP (calculated)

9.654

GRAVY (calculated)

0.086

Length

169 amino acids

Sequence
(BLAST)

001: MATLFDSLAV VRLPTAARRT SVMLPHCAGL RLRPAAASRL VASPARRIAS RAARVACEAQ DTAVEVAPIT DANWQSLVLE SESAVLVEFW APWCGPCRMI
101: HPIIDELAKQ YAGKLKCYKL NTDESPSTAT RYGIRSIPTV MIFKSGEKKD TVIGAVPKST LTTSIEKFV

Best Arabidopsis Sequence Match ( AT3G15360.1 )
(BLAST)

001: MASLLDSVTV TRVFSLPIAA SVSSSSAAPS VSRRRISPAR FLEFRGLKSS RSLVTQSASL GANRRTRIAR GGRIACEAQD TTAAAVEVPN LSDSEWQTKV
101: LESDVPVLVE FWAPWCGPCR MIHPIVDQLA KDFAGKFKFY KINTDESPNT ANRYGIRSVP TVIIFKGGEK KDSIIGAVPR ETLEKTIERF LVE

Arabidopsis Description

ATHM4TRX-M4 [Source:UniProtKB/TrEMBL;Acc:A0A178VJ83]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.