Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- cytosol 1
- endoplasmic reticulum 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr10P... | |
| GSMUA_Achr10P... | |
| GSMUA_Achr2P09630_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G15360.1 | GSMUA_Achr10P... | AT3G27960.1 | 21798944 |
| AT3G15360.1 | GSMUA_Achr2P09630_001 | AT3G27960.1 | 21798944 |
| AT3G15360.1 | GSMUA_Achr10P... | AT4G25200.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G091130.1 | Barley | mitochondrion | 41.35 | 69.01 |
| GSMUA_Achr1P00150_001 | Banana | plastid | 53.16 | 67.02 |
| VIT_00s0238g00110.t01 | Wine grape | cytosol | 19.83 | 66.2 |
| GSMUA_Achr11P... | Banana | plastid | 48.95 | 63.74 |
| TraesCS2D01G368700.1 | Wheat | plastid | 46.84 | 60.99 |
| EES07212 | Sorghum | plastid | 44.73 | 60.92 |
| TraesCS2A01G372500.1 | Wheat | plastid | 47.26 | 60.87 |
| Zm00001d051250_P001 | Maize | plastid | 44.3 | 60.69 |
| Zm00001d017379_P001 | Maize | plastid | 44.3 | 60.69 |
| Os04t0530600-01 | Rice | plastid | 45.99 | 60.56 |
| TraesCS2B01G389500.1 | Wheat | plastid | 47.26 | 60.54 |
| Os02t0639900-01 | Rice | plastid | 43.88 | 60.12 |
| GSMUA_Achr5P20730_001 | Banana | plastid | 46.84 | 58.42 |
| Zm00001d002854_P001 | Maize | plastid | 43.88 | 57.14 |
| KRH55312 | Soybean | nucleus, plastid | 40.08 | 56.21 |
| GSMUA_Achr5P12100_001 | Banana | plastid | 58.23 | 56.1 |
| KRH26086 | Soybean | plastid | 40.93 | 55.43 |
| EES12552 | Sorghum | plastid | 43.04 | 54.84 |
| KRH22105 | Soybean | plastid | 40.93 | 53.3 |
| HORVU2Hr1G091200.5 | Barley | cytosol | 41.35 | 52.97 |
| Solyc07g063190.2.1 | Tomato | plastid | 40.51 | 52.75 |
| PGSC0003DMT400032333 | Potato | cytosol, extracellular, mitochondrion, plastid | 40.51 | 52.75 |
| VIT_19s0014g02890.t01 | Wine grape | plastid | 41.35 | 52.13 |
| KRH27229 | Soybean | plastid | 39.66 | 51.65 |
| PGSC0003DMT400064434 | Potato | plastid | 39.66 | 50.27 |
| Solyc10g006970.2.1 | Tomato | plastid | 39.24 | 49.73 |
| Solyc12g013810.1.1 | Tomato | plastid | 36.29 | 48.04 |
| PGSC0003DMT400039743 | Potato | plastid | 35.87 | 47.49 |
| Bra001592.1-P | Field mustard | extracellular, plasma membrane | 29.54 | 42.94 |
| GSMUA_Achr3P02940_001 | Banana | extracellular | 20.25 | 41.74 |
| GSMUA_Achr11P... | Banana | plastid | 32.07 | 41.53 |
| AT3G15360.1 | Thale cress | plastid | 33.76 | 41.45 |
| CDX97662 | Canola | plastid | 33.33 | 41.15 |
| Bra027250.1-P | Field mustard | plastid | 33.33 | 41.15 |
| CDX98554 | Canola | plastid | 32.91 | 40.62 |
| GSMUA_Achr11P... | Banana | cytosol | 11.39 | 36.99 |
| CDX82437 | Canola | endoplasmic reticulum | 18.99 | 35.71 |
| CDX75826 | Canola | endoplasmic reticulum | 18.99 | 35.43 |
| GSMUA_Achr2P03790_001 | Banana | plastid | 20.25 | 26.97 |
| GSMUA_Achr6P25720_001 | Banana | plastid | 18.99 | 26.47 |
| GSMUA_Achr1P13230_001 | Banana | extracellular | 14.35 | 25.19 |
Protein Annotations
| MapMan:10.5.5 | Gene3D:3.40.30.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005623 |
| GO:GO:0006662 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0015035 | GO:GO:0019725 |
| GO:GO:0045454 | GO:GO:0055114 | EnsemblPlantsGene:GSMUA_Achr4G29990_001 | EnsemblPlants:GSMUA_Achr4P29990_001 | EnsemblPlants:GSMUA_Achr4T29990_001 | InterPro:IPR013766 |
| UniProt:M0STB1 | PFAM:PF00085 | PRINTS:PR00421 | ScanProsite:PS00194 | PFscan:PS51352 | PANTHER:PTHR10438 |
| PANTHER:PTHR10438:SF356 | SUPFAM:SSF52833 | TIGRFAMs:TIGR01068 | InterPro:Thioredoxin | InterPro:Thioredoxin-like_sf | InterPro:Thioredoxin_CS |
| InterPro:Thioredoxin_domain | UniParc:UPI000296DE25 | SEG:seg | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G29990_001]
Coordinates
chr4:-:27780711..27783978
Molecular Weight (calculated)
25234.9 Da
IEP (calculated)
8.907
GRAVY (calculated)
0.215
Length
237 amino acids
Sequence
(BLAST)
(BLAST)
001: MTLAPPFCVI SLSPALSESP PHLISHPLRL SLSLSDTSSS FSLQPTLLSS TMAAAAAAAV ILEPLAVPCP SRGVALASAR SPRTSRRSGL LLPRFSGLRC
101: SPLPSRVRAA APARPRAVGS GAVVCEAQDT AVQLPEVGKA TWQSLVLDSD IPVLVDFWAP WCGPCRMIEP LVIKLSKVYE GKLKCYKLNT DENPDIASQY
201: GIRSIPTMMI FKNGEKKDAV IGAVPESTLI TSIEKFI
101: SPLPSRVRAA APARPRAVGS GAVVCEAQDT AVQLPEVGKA TWQSLVLDSD IPVLVDFWAP WCGPCRMIEP LVIKLSKVYE GKLKCYKLNT DENPDIASQY
201: GIRSIPTMMI FKNGEKKDAV IGAVPESTLI TSIEKFI
001: MAAYTCTSRP PISIRSEMRI ASSPTGSFST RQMFSVLPES SGLRTRVSLS SLSKNSRVSR LRRGVICEAQ DTATGIPVVN DSTWDSLVLK ADEPVFVDFW
101: APWCGPCKMI DPIVNELAQK YAGQFKFYKL NTDESPATPG QYGVRSIPTI MIFVNGEKKD TIIGAVSKDT LATSINKFL
101: APWCGPCKMI DPIVNELAQK YAGQFKFYKL NTDESPATPG QYGVRSIPTI MIFVNGEKKD TIIGAVSKDT LATSINKFL
Arabidopsis Description
ATHM1Thioredoxin M1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O48737]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.