Factsheet for Solyc12g013810.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g086840.2.1
Solyc08g078700.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G15360.1	Solyc02g086840.2.1	AT3G27960.1	21798944
AT3G15360.1	Solyc08g078700.2.1	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039743	Potato	plastid	97.77	97.77
VIT_00s0238g00110.t01	Wine grape	cytosol	27.37	69.01
Solyc07g063190.2.1	Tomato	plastid	66.48	65.38
Solyc10g006970.2.1	Tomato	plastid	67.04	64.17
KRH55312	Soybean	nucleus, plastid	53.07	56.21
KRH22105	Soybean	plastid	56.42	55.49
KRH26086	Soybean	plastid	54.19	55.43
KRH27229	Soybean	plastid	54.75	53.85
VIT_19s0014g02890.t01	Wine grape	plastid	55.87	53.19
HORVU2Hr1G091130.1	Barley	mitochondrion	41.34	52.11
Bra001592.1-P	Field mustard	extracellular, plasma membrane	46.37	50.92
AT3G15360.1	Thale cress	plastid	52.51	48.7
CDX97662	Canola	plastid	51.4	47.92
Bra027250.1-P	Field mustard	plastid	51.4	47.92
CDX98554	Canola	plastid	51.4	47.92
CDX82437	Canola	endoplasmic reticulum	32.96	46.83
GSMUA_Achr1P00150_001	Banana	plastid	48.6	46.28
TraesCS2D01G368700.1	Wheat	plastid	46.37	45.6
Os02t0639900-01	Rice	plastid	43.58	45.09
CDX75826	Canola	endoplasmic reticulum	31.84	44.88
Zm00001d051250_P001	Maize	plastid	43.02	44.51
Zm00001d017379_P001	Maize	plastid	43.02	44.51
TraesCS2B01G389500.1	Wheat	plastid	45.81	44.32
EES07212	Sorghum	plastid	43.02	44.25
TraesCS2A01G372500.1	Wheat	plastid	45.25	44.02
Zm00001d002854_P001	Maize	plastid	44.69	43.96
Os04t0530600-01	Rice	plastid	44.13	43.89
Solyc10g008390.2.1	Tomato	plastid	44.69	43.72
GSMUA_Achr5P20730_001	Banana	plastid	44.69	42.11
EES12552	Sorghum	plastid	42.46	40.86
GSMUA_Achr11P...	Banana	plastid	41.34	40.66
HORVU2Hr1G091200.5	Barley	cytosol	41.34	40.0
GSMUA_Achr4P29990_001	Banana	plastid	48.04	36.29
GSMUA_Achr5P12100_001	Banana	plastid	48.6	35.37
Solyc01g108020.2.1	Tomato	plastid	32.4	32.22
Solyc04g071560.2.1	Tomato	plastid	24.02	24.71
Solyc01g008250.2.1	Tomato	plastid	24.58	24.18

Protein Annotations

MapMan:10.5.5	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004791	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006662	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0015035	GO:GO:0016671	GO:GO:0019725	GO:GO:0034599
GO:GO:0045454	GO:GO:0047134	GO:GO:0055114	GO:GO:0098869	InterPro:IPR013766	UniProt:K4DCR6
PFAM:PF00085	PRINTS:PR00421	ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF367
SUPFAM:SSF52833	EnsemblPlantsGene:Solyc12g013810.1	EnsemblPlants:Solyc12g013810.1.1	TIGRFAMs:TIGR01068	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf
InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI000276A4BB	SEG:seg	:	:

Description

No Description!

Coordinates

chr12:-:4597746..4599971

Molecular Weight (calculated)

19341.4 Da

IEP (calculated)

9.381

GRAVY (calculated)

0.118

Length

179 amino acids

Sequence
(BLAST)

001: MAGLLETIAV PRAAAAAASP SLSPVSGRRS SVKFSLFNGL KIQSTRSSVS FSSFTKSVPS RGGRIVCEAQ DTAVLVPGVN DQSWETLVIG SKLPVLVEFW
101: APWCGPCRMI HPVIDELSQE FADKFKFFKV NTDESPGIAT RYGIRSIPTV MIFKDGEKKD TVIGAVPKTT LTACIEKFL

Best Arabidopsis Sequence Match ( AT3G15360.1 )
(BLAST)

001: MASLLDSVTV TRVFSLPIAA SVSSSSAAPS VSRRRISPAR FLEFRGLKSS RSLVTQSASL GANRRTRIAR GGRIACEAQD TTAAAVEVPN LSDSEWQTKV
101: LESDVPVLVE FWAPWCGPCR MIHPIVDQLA KDFAGKFKFY KINTDESPNT ANRYGIRSVP TVIIFKGGEK KDSIIGAVPR ETLEKTIERF LVE

Arabidopsis Description

ATHM4TRX-M4 [Source:UniProtKB/TrEMBL;Acc:A0A178VJ83]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.