CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER89430
EER89431
EES05647
KXG19616
OQU75612
OQU75930
OQU76071
OQU85385

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G15360.1	EES05647	AT3G27960.1	21798944
AT3G15360.1	EER89430	AT4G25200.1	21798944
AT3G15360.1	EER89431	AT4G25200.1	21798944
AT3G15360.1	KXG19616	AT4G25200.1	21798944
AT3G15360.1	OQU75612	AT4G25200.1	21798944
AT3G15360.1	OQU75930	AT4G25200.1	21798944
AT3G15360.1	OQU76071	AT4G25200.1	21798944
AT3G15360.1	OQU85385	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017379_P001	Maize	plastid	93.68	94.22
Zm00001d051250_P001	Maize	plastid	91.38	91.91
Os02t0639900-01	Rice	plastid	70.69	71.1
VIT_00s0238g00110.t01	Wine grape	cytosol	26.44	64.79
EES12552	Sorghum	plastid	65.52	61.29
GSMUA_Achr11P...	Banana	plastid	57.47	54.95
GSMUA_Achr1P00150_001	Banana	plastid	59.2	54.79
GSMUA_Achr5P20730_001	Banana	plastid	56.32	51.58
KRH55312	Soybean	nucleus, plastid	50.0	51.48
KRH26086	Soybean	plastid	50.57	50.29
PGSC0003DMT400032333	Potato	cytosol, extracellular, mitochondrion, plastid	50.57	48.35
Solyc07g063190.2.1	Tomato	plastid	50.0	47.8
KRH22105	Soybean	plastid	50.0	47.8
KRH27229	Soybean	plastid	48.28	46.15
GSMUA_Achr4P29990_001	Banana	plastid	60.92	44.73
Solyc10g006970.2.1	Tomato	plastid	47.7	44.38
PGSC0003DMT400064434	Potato	plastid	47.13	43.85
VIT_19s0014g02890.t01	Wine grape	plastid	47.13	43.62
PGSC0003DMT400039743	Potato	plastid	44.83	43.58
Solyc12g013810.1.1	Tomato	plastid	44.25	43.02
GSMUA_Achr5P12100_001	Banana	plastid	60.34	42.68
Bra001592.1-P	Field mustard	extracellular, plasma membrane	39.08	41.72
EES16784	Sorghum	plastid	42.53	40.44
CDX97662	Canola	plastid	43.68	39.58
Bra027250.1-P	Field mustard	plastid	43.68	39.58
CDX98554	Canola	plastid	43.1	39.06
AT3G15360.1	Thale cress	plastid	43.1	38.86
KXG20981	Sorghum	plastid	39.08	38.86
CDX82437	Canola	endoplasmic reticulum	25.86	35.71
CDX75826	Canola	endoplasmic reticulum	25.29	34.65
EES12176	Sorghum	plastid	31.61	28.8
EES11645	Sorghum	plastid	27.59	27.43
EES02107	Sorghum	plastid	23.56	23.98

Protein Annotations

MapMan:10.5.5	Gene3D:3.40.30.10	EntrezGene:8066203	UniProt:C5XYA2	EnsemblPlants:EES07212	ProteinID:EES07212
ProteinID:EES07212.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004791	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006662	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0015035	GO:GO:0016671	GO:GO:0019725	GO:GO:0034599	GO:GO:0045454
GO:GO:0047134	GO:GO:0055114	GO:GO:0098869	InterPro:IPR013766	PFAM:PF00085	PRINTS:PR00421
ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF356	EnsemblPlantsGene:SORBI_3004G228200	SUPFAM:SSF52833
unigene:Sbi.669	TIGRFAMs:TIGR01068	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain
UniParc:UPI0001A85935	RefSeq:XP_002454236.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:57777680..57780705

Molecular Weight (calculated)

18459.5 Da

IEP (calculated)

9.330

GRAVY (calculated)

0.052

Length

174 amino acids

Sequence
(BLAST)

001: MASRLAVAVA APASPSPSPA ATVAPPRLAL RRGVPAPTWS ALRTAVPRSR GAAVVCLAQG GQDTAIQVPD VSKSTWQSLV VESELPVLVQ FWASWCGPCK
101: MIDPIVGKLS KEYEGKLKCY KLNTDENPDI ATQLGIRSIP TMMIFKNGEK KDAVIGAVPE STLVTCIDKY VGGR

Best Arabidopsis Sequence Match ( AT3G15360.1 )
(BLAST)

001: MASLLDSVTV TRVFSLPIAA SVSSSSAAPS VSRRRISPAR FLEFRGLKSS RSLVTQSASL GANRRTRIAR GGRIACEAQD TTAAAVEVPN LSDSEWQTKV
101: LESDVPVLVE FWAPWCGPCR MIHPIVDQLA KDFAGKFKFY KINTDESPNT ANRYGIRSVP TVIIFKGGEK KDSIIGAVPR ETLEKTIERF LVE

Arabidopsis Description

ATHM4TRX-M4 [Source:UniProtKB/TrEMBL;Acc:A0A178VJ83]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.