CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES06920

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50320.1	EES06920	AT3G11630.1	25448674
AT1G50320.1	EES06920	AT5G06290.1	25448674

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d026608_P001	Maize	plastid	89.14	89.14
Zm00001d001843_P001	Maize	plastid	86.86	85.88
Os04t0676100-01	Rice	extracellular, plastid	74.29	72.22
TraesCS2A01G555300.1	Wheat	plastid	67.43	68.6
TraesCS2D01G559200.1	Wheat	plastid	66.86	67.63
TraesCS2B01G588600.1	Wheat	plastid	66.29	66.29
VIT_10s0042g00430.t01	Wine grape	cytosol	28.57	58.82
GSMUA_Achr2P03790_001	Banana	plastid	58.86	57.87
KRH36129	Soybean	plastid	47.43	47.16
KRG90625	Soybean	plastid	48.57	46.96
VIT_10s0042g00200.t01	Wine grape	plastid	46.29	46.02
CDY42508	Canola	plastid	46.29	45.0
AT1G50320.1	Thale cress	plastid	46.29	44.51
Bra018842.1-P	Field mustard	plastid	45.71	43.96
CDY22789	Canola	plastid	45.14	43.41
Solyc01g008250.2.1	Tomato	plastid	44.0	42.31
PGSC0003DMT400042164	Potato	cytosol, plastid	43.43	41.3
EES07212	Sorghum	plastid	27.43	27.59
EES02107	Sorghum	plastid	25.14	25.73
KXG20981	Sorghum	plastid	25.14	25.14
EES12552	Sorghum	plastid	26.29	24.73
EES12176	Sorghum	plastid	26.86	24.61
EES16784	Sorghum	plastid	22.86	21.86

Protein Annotations

MapMan:10.5.6	Gene3D:3.40.30.10	EntrezGene:8085863	UniProt:C5YAH6	EnsemblPlants:EES11645	ProteinID:EES11645
ProteinID:EES11645.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004791	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006662	GO:GO:0006950	GO:GO:0008047	GO:GO:0008150
GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0015035
GO:GO:0016671	GO:GO:0019725	GO:GO:0030234	GO:GO:0034599	GO:GO:0043085	GO:GO:0045454
GO:GO:0047134	GO:GO:0055114	GO:GO:0098869	InterPro:IPR013766	PFAM:PF00085	PRINTS:PR00421
PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF270	EnsemblPlantsGene:SORBI_3006G265900	SUPFAM:SSF52833	TIGRFAMs:TIGR01068
InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI0001A872F3	RefSeq:XP_002447317.1	:

Description

hypothetical protein

Coordinates

chr6:+:59968764..59971233

Molecular Weight (calculated)

18974.8 Da

IEP (calculated)

8.488

GRAVY (calculated)

-0.145

Length

175 amino acids

Sequence
(BLAST)

001: MASAPSTTAH TLAPSHRTPV SSAPRGARLP AAFRLSCAQP GPAGCRAASG RLARPRARVR CGAAARFIGQ GEFPAEVLES ELPVLVDFVA DWCGPCRLIA
101: PVVDWASEEY NERLKIVKID HDANPQLIEE YKVFGLPTLI LFKNGQEVPG SRYEGAMTKD KFKQYLEPLL TTTVA

Best Arabidopsis Sequence Match ( AT1G50320.1 )
(BLAST)

001: MDSIVSSSTI LMRSYLTPPV RSCSPATSVS VKPLSSVQVT SVAANRHLLS LSSGARRTRK SSSSVIRCGG IKEIGESEFS STVLESAQPV LVEFVATWCG
101: PCKLIYPAME ALSQEYGDKL TIVKIDHDAN PKLIAEFKVY GLPHFILFKD GKEVPGSRRE GAITKAKLKE YIDGLLNSIS VA

Arabidopsis Description

ATHXThioredoxin X, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LD49]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.