CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH67987

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50320.1	KRH67987	AT3G11630.1	25448674
AT1G50320.1	KRH67987	AT5G06290.1	25448674

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG90625	Soybean	plastid	89.2	86.74
VIT_10s0042g00430.t01	Wine grape	cytosol	38.07	78.82
VIT_10s0042g00200.t01	Wine grape	plastid	63.07	63.07
AT1G50320.1	Thale cress	plastid	55.11	53.3
Solyc01g008250.2.1	Tomato	plastid	52.84	51.1
GSMUA_Achr2P03790_001	Banana	plastid	51.14	50.56
CDY42508	Canola	plastid	51.7	50.56
Bra018842.1-P	Field mustard	plastid	52.27	50.55
CDY22789	Canola	plastid	51.7	50.0
PGSC0003DMT400042164	Potato	cytosol, plastid	51.7	49.46
EES11645	Sorghum	plastid	47.16	47.43
Zm00001d001843_P001	Maize	plastid	46.59	46.33
Zm00001d026608_P001	Maize	plastid	45.45	45.71
Os04t0676100-01	Rice	extracellular, plastid	45.45	44.44
TraesCS2A01G555300.1	Wheat	plastid	43.18	44.19
TraesCS2D01G559200.1	Wheat	plastid	42.61	43.35
TraesCS2B01G588600.1	Wheat	plastid	42.05	42.29
KRH27229	Soybean	plastid	28.41	27.47
KRH22105	Soybean	plastid	26.7	25.82
KRH26086	Soybean	plastid	25.0	25.14
KRG91663	Soybean	plastid	25.0	25.14
KRH55312	Soybean	nucleus, plastid	23.86	24.85
KRH35133	Soybean	plastid	24.43	24.57
KRH53365	Soybean	plastid	24.43	23.76
KRH64566	Soybean	plastid	24.43	23.76
KRH18101	Soybean	plastid	12.5	23.16
KRH50300	Soybean	plastid	21.59	21.84
KRH70646	Soybean	plastid	19.32	20.12
KRH15927	Soybean	plastid	11.93	16.54

Protein Annotations

MapMan:10.5.6	Gene3D:3.40.30.10	EMBL:ACUP02006721	EnsemblPlantsGene:GLYMA_10G285000	GO:GO:0003674	GO:GO:0003824
GO:GO:0004791	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006662
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015035	GO:GO:0016671
GO:GO:0019725	GO:GO:0034599	GO:GO:0045454	GO:GO:0047134	GO:GO:0055114	GO:GO:0098869
InterPro:IPR013766	UniProt:K7LLZ8	EnsemblPlants:KRH36129	ProteinID:KRH36129	ProteinID:KRH36129.1	PFAM:PF00085
PRINTS:PR00421	PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF270	SUPFAM:SSF52833	InterPro:Thioredoxin
InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI000294DD7D	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr10:+:50534783..50537116

Molecular Weight (calculated)

19285.3 Da

IEP (calculated)

8.943

GRAVY (calculated)

-0.034

Length

176 amino acids

Sequence
(BLAST)

001: MDTVTLSLLS LPPVPVRTVS ASASTSSSVP LTHSYSCSAR QRLSSHRTRL SFRNHSSAVP KLTVTCGAAV TEINETQFKD TVLKANRPVL VEFVATWCGP
101: CRLISSAMDP SLRLTVVKID HDANPQLIEE YKVYGLPTLI LFKNGQEVPE SRREGAITKL KLKEYVDALL ESISVS

Best Arabidopsis Sequence Match ( AT1G50320.1 )
(BLAST)

001: MDSIVSSSTI LMRSYLTPPV RSCSPATSVS VKPLSSVQVT SVAANRHLLS LSSGARRTRK SSSSVIRCGG IKEIGESEFS STVLESAQPV LVEFVATWCG
101: PCKLIYPAME ALSQEYGDKL TIVKIDHDAN PKLIAEFKVY GLPHFILFKD GKEVPGSRRE GAITKAKLKE YIDGLLNSIS VA

Arabidopsis Description

ATHXThioredoxin X, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LD49]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.