Factsheet for Bra018842.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001415.1-P
Bra009181.1-P
Bra034824.1-P
Bra038667.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50320.1	Bra001415.1-P	AT3G11630.1	25448674
AT1G50320.1	Bra034824.1-P	AT3G11630.1	25448674
AT1G50320.1	Bra038667.1-P	AT3G11630.1	25448674
AT1G50320.1	Bra009181.1-P	AT5G06290.1	25448674

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22789	Canola	plastid	97.8	97.8
CDY42508	Canola	plastid	95.6	96.67
AT1G50320.1	Thale cress	plastid	78.57	78.57
VIT_10s0042g00430.t01	Wine grape	cytosol	31.87	68.24
VIT_10s0042g00200.t01	Wine grape	plastid	52.75	54.55
KRH36129	Soybean	plastid	50.55	52.27
KRG90625	Soybean	plastid	51.65	51.93
Solyc01g008250.2.1	Tomato	plastid	50.55	50.55
PGSC0003DMT400042164	Potato	cytosol, plastid	49.45	48.91
Os04t0676100-01	Rice	extracellular, plastid	47.8	48.33
TraesCS2B01G588600.1	Wheat	plastid	45.6	47.43
TraesCS2D01G559200.1	Wheat	plastid	45.05	47.4
Zm00001d001843_P001	Maize	plastid	45.6	46.89
TraesCS2A01G555300.1	Wheat	plastid	43.96	46.51
EES11645	Sorghum	plastid	43.96	45.71
Zm00001d026608_P001	Maize	plastid	43.41	45.14
GSMUA_Achr2P03790_001	Banana	plastid	43.41	44.38
Bra027250.1-P	Field mustard	plastid	28.02	26.56
Bra015721.1-P	Field mustard	plastid	24.18	25.58
Bra001592.1-P	Field mustard	extracellular, plasma membrane	22.53	25.15
Bra000821.1-P	Field mustard	plastid	23.63	23.89
Bra034214.1-P	Field mustard	plastid	23.63	23.37
Bra015223.1-P	Field mustard	plastid	21.43	22.81
Bra019005.1-P	Field mustard	extracellular	14.29	18.84
Bra032547.1-P	Field mustard	plastid	23.08	12.54

Protein Annotations

MapMan:10.5.6	Gene3D:3.40.30.10	EnsemblPlantsGene:Bra018842	EnsemblPlants:Bra018842.1	EnsemblPlants:Bra018842.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006662
GO:GO:0008047	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570
GO:GO:0009987	GO:GO:0015035	GO:GO:0016671	GO:GO:0019725	GO:GO:0030234	GO:GO:0043085
GO:GO:0045454	GO:GO:0055114	InterPro:IPR013766	UniProt:M4DQP9	PFAM:PF00085	PFscan:PS51352
PANTHER:PTHR10438	PANTHER:PTHR10438:SF270	SUPFAM:SSF52833	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain
UniParc:UPI000253EAF7	SEG:seg	:	:	:	:

Description

AT1G50320 (E=1e-069) ATHX, ATX | ATHX; enzyme activator

Coordinates

chrA06:+:1658070..1658722

Molecular Weight (calculated)

19735.7 Da

IEP (calculated)

8.912

GRAVY (calculated)

0.010

Length

182 amino acids

Sequence
(BLAST)

001: MDCIVSSSTV LIRSHLTPIR SASSVSAKPL SSAQVASFAA NRHILSFKSD LKRIRTLSTN ASSSTIRCGG IKEIGESEFT STVLESDRPV LVNFVATWCG
101: PCKLVYPATE ALSQEYGDRL TIVKIDHDAN PNLIAEYKVY GLPHFILFKD GKEVAGSRRE GAITKAKLKE YIDGLLTSIS VA

Best Arabidopsis Sequence Match ( AT1G50320.1 )
(BLAST)

001: MDSIVSSSTI LMRSYLTPPV RSCSPATSVS VKPLSSVQVT SVAANRHLLS LSSGARRTRK SSSSVIRCGG IKEIGESEFS STVLESAQPV LVEFVATWCG
101: PCKLIYPAME ALSQEYGDKL TIVKIDHDAN PKLIAEFKVY GLPHFILFKD GKEVPGSRRE GAITKAKLKE YIDGLLNSIS VA

Arabidopsis Description

ATHXThioredoxin X, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LD49]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.