Factsheet for Bra015223.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68513	Canola	plastid	97.66	97.66
CDY36637	Canola	plastid	97.66	97.66
AT2G15570.2	Thale cress	plastid	84.8	83.33
VIT_03s0063g00280.t01	Wine grape	plastid	54.39	54.07
GSMUA_Achr11P...	Banana	cytosol	22.22	52.05
KRH50300	Soybean	plastid	50.88	50.0
GSMUA_Achr3P02940_001	Banana	extracellular	33.33	49.57
KRH70646	Soybean	plastid	47.95	48.52
PGSC0003DMT400066596	Potato	plastid	50.88	48.33
Solyc01g108020.2.1	Tomato	plastid	50.29	47.78
Os04t0430800-01	Rice	plastid	37.43	36.57
Zm00001d003667_P002	Maize	plastid	37.43	34.04
EES12176	Sorghum	plastid	38.01	34.03
HORVU2Hr1G075240.6	Barley	plastid	36.26	33.7
TraesCS2A01G303200.1	Wheat	plastid	36.26	28.97
Bra001592.1-P	Field mustard	extracellular, plasma membrane	27.49	28.83
Bra000821.1-P	Field mustard	plastid	29.24	27.78
Bra034214.1-P	Field mustard	plastid	29.24	27.17
Bra027250.1-P	Field mustard	plastid	30.41	27.08
TraesCS2D01G301800.1	Wheat	plastid	37.43	26.23
Bra015721.1-P	Field mustard	plastid	24.56	24.42
Bra018842.1-P	Field mustard	plastid	22.81	21.43
Bra019005.1-P	Field mustard	extracellular	15.2	18.84
Bra032547.1-P	Field mustard	plastid	26.32	13.43

Protein Annotations

MapMan:10.5.5	Gene3D:3.40.30.10	EnsemblPlantsGene:Bra015223	EnsemblPlants:Bra015223.1	EnsemblPlants:Bra015223.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0006662	GO:GO:0008047	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725	GO:GO:0030234	GO:GO:0043085
GO:GO:0045454	GO:GO:0055114	InterPro:IPR013766	UniProt:M4DFF0	PFAM:PF00085	PRINTS:PR00421
ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF233	SUPFAM:SSF52833	InterPro:Thioredoxin
InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI000254464A	SEG:seg	:

Description

AT2G15570 (E=4e-060) ATHM3, ATM3 | thioredoxin M-type 3, chloroplast (TRX-M3)

Coordinates

chrA10:+:3261047..3262040

Molecular Weight (calculated)

18805.6 Da

IEP (calculated)

8.476

GRAVY (calculated)

-0.051

Length

171 amino acids

Sequence
(BLAST)

001: MAVSSSSMCL NAGRLPPARS ISSPSRLFPV TSFSPRSLLL SDRRSLVSSS GSRLRSSALC LRDSKAAEVT QSSWENSVLK SETPVLVEFY TSWCGPCRMV
101: HRIINEIAGD YAGKLNCYVL DADSDSLVAE EYEIKAVPVV LLFKNGQKRE SIMGTMPKEF YISAIERVLN S

Best Arabidopsis Sequence Match ( AT2G15570.1 )
(BLAST)

001: MAISSSSSSI CFNPTRFHTA RHISSPSRLF PVTSFSPRSL RFSDRRSLLS SSASRLRLSP LCVRDSRAAE VTQRSWEDSV LKSETPVLVE FYTSWCGPCR
101: MVHRIIDEIA GDYAGKLNCY LLNADNDLPV AEEYEIKAVP VVLLFKNGEK RESIMGTMPK EFYISAIERV LNS

Arabidopsis Description

ATHM3Thioredoxin superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IIH6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.