Factsheet for GSMUA_Achr3P02940_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 2
plastid 3
extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	49.57	78.08
Os04t0430800-01	Rice	plastid	68.7	45.14
HORVU2Hr1G075240.6	Barley	plastid	67.83	42.39
EES12176	Sorghum	plastid	69.57	41.88
Zm00001d003667_P002	Maize	plastid	67.83	41.49
TraesCS2A01G303200.1	Wheat	plastid	66.96	35.98
PGSC0003DMT400066596	Potato	plastid	55.65	35.56
VIT_03s0063g00280.t01	Wine grape	plastid	53.04	35.47
Solyc01g108020.2.1	Tomato	plastid	54.78	35.0
AT2G15570.2	Thale cress	plastid	52.17	34.48
CDX68513	Canola	plastid	50.43	33.92
CDY36637	Canola	plastid	50.43	33.92
KRH70646	Soybean	plastid	49.57	33.73
Bra015223.1-P	Field mustard	plastid	49.57	33.33
KRH50300	Soybean	plastid	50.43	33.33
TraesCS2D01G301800.1	Wheat	plastid	66.09	31.15
GSMUA_Achr11P...	Banana	plastid	45.22	28.42
GSMUA_Achr1P00150_001	Banana	plastid	43.48	26.6
GSMUA_Achr5P20730_001	Banana	plastid	41.74	25.26
GSMUA_Achr11P...	Banana	plastid	39.13	24.73
GSMUA_Achr2P03790_001	Banana	plastid	34.78	22.47
GSMUA_Achr1P13230_001	Banana	extracellular	25.22	21.48
GSMUA_Achr4P29990_001	Banana	plastid	41.74	20.25
GSMUA_Achr5P12100_001	Banana	plastid	42.61	19.92
GSMUA_Achr6P25720_001	Banana	plastid	26.09	17.65

Protein Annotations

MapMan:10.5.5	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623
GO:GO:0006662	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725
GO:GO:0045454	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr3G02940_001	EnsemblPlants:GSMUA_Achr3P02940_001	EnsemblPlants:GSMUA_Achr3T02940_001	InterPro:IPR013766
UniProt:M0SBB2	PFAM:PF00085	PIRSF:PIRSF000077	PRINTS:PR00421	ScanProsite:PS00194	PFscan:PS51352
PANTHER:PTHR10438	PANTHER:PTHR10438:SF233	SUPFAM:SSF52833	SignalP:SignalP-noTM	TIGRFAMs:TIGR01068	InterPro:Thioredoxin
InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI0002958D16	:	:

Description

Thioredoxin M3, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr3G02940_001]

Coordinates

chr3:+:1934995..1935342

Molecular Weight (calculated)

13060.0 Da

IEP (calculated)

5.102

GRAVY (calculated)

0.248

Length

115 amino acids

Sequence
(BLAST)

001: MMINFFCWVF VAETITASAW DVSVLQSDLP VLVEFWASWC GPCKMVHRLL DEIAREYAGR IKLYKLNTDD DPQVATVHGI DRIPTVLLFK NGEKLKSITG
101: TLPKSVYVEA IEQLL

Best Arabidopsis Sequence Match ( AT2G15570.2 )
(BLAST)

001: MAISSSSSSI CFNPTRFHTA RHISSPSRLF PVTSFSPRSL RFSDRRSLLS SSASRLRLSP LCVRDSRAAA EVTQRSWEDS VLKSETPVLV EFYTSWCGPC
101: RMVHRIIDEI AGDYAGKLNC YLLNADNDLP VAEEYEIKAV PVVLLFKNGE KRESIMGTMP KEFYISAIER VLNS

Arabidopsis Description

ATHM3Thioredoxin superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IIH6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.