Factsheet for Zm00001d003667_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES12176	Sorghum	plastid	87.77	86.39
Os04t0430800-01	Rice	plastid	70.21	75.43
HORVU2Hr1G075240.6	Barley	plastid	70.21	71.74
GSMUA_Achr3P02940_001	Banana	extracellular	41.49	67.83
GSMUA_Achr11P...	Banana	cytosol	24.47	63.01
TraesCS2A01G303200.1	Wheat	plastid	70.21	61.68
TraesCS2D01G301800.1	Wheat	plastid	68.62	52.87
PGSC0003DMT400066596	Potato	plastid	38.83	40.56
Solyc01g108020.2.1	Tomato	plastid	38.3	40.0
CDY36637	Canola	plastid	34.57	38.01
Bra015223.1-P	Field mustard	plastid	34.04	37.43
CDX68513	Canola	plastid	34.04	37.43
VIT_03s0063g00280.t01	Wine grape	plastid	34.04	37.21
AT2G15570.2	Thale cress	plastid	34.04	36.78
KRH70646	Soybean	plastid	31.91	35.5
KRH50300	Soybean	plastid	32.45	35.06
Zm00001d041804_P001	Maize	plastid	30.85	34.73
Zm00001d023707_P002	Maize	plastid	31.38	33.91
Zm00001d002854_P001	Maize	plastid	30.32	31.32
Zm00001d051250_P001	Maize	plastid	28.72	31.21
Zm00001d017379_P001	Maize	plastid	28.19	30.64
Zm00001d042017_P002	Maize	plastid	23.4	26.35
Zm00001d026608_P001	Maize	plastid	24.47	26.29
Zm00001d001843_P001	Maize	plastid	24.47	25.99

Protein Annotations

MapMan:10.5.5	EntrezGene:103646448	Gene3D:3.40.30.10	UniProt:A0A1D6EAQ4	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005623	GO:GO:0006662	GO:GO:0008047	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0015035	GO:GO:0019725	GO:GO:0030234	GO:GO:0043085	GO:GO:0045454
GO:GO:0055114	InterPro:IPR013766	ProteinID:ONM17442.1	ProteinID:ONM17443.1	PFAM:PF00085	PRINTS:PR00421
ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF233	SUPFAM:SSF52833	TIGRFAMs:TIGR01068
InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI0002219B06	EnsemblPlantsGene:Zm00001d003667
EnsemblPlants:Zm00001d003667_P002	EnsemblPlants:Zm00001d003667_T002	SEG:seg	:	:	:

Description

thioredoxin M3

Coordinates

chr2:+:53266869..53273843

Molecular Weight (calculated)

21094.4 Da

IEP (calculated)

9.614

GRAVY (calculated)

-0.214

Length

188 amino acids

Sequence
(BLAST)

001: MAAVAALSCP APPRVFRCAK TLPAPSAATS SRGRVGYGSS YARRWQCRRW THRPDATTTR IRRATPRRTA VVRVNCAYSP RAETITACSW NEYVICSDVP
101: VLIEFWASWC GPCRMVTRIV DEIAQEYVGR IKCYKLDTDD YPQVATAYSI ERIPTVLLFK DGEKIHSITG TLPKAVYVKA IEKSISEQ

Best Arabidopsis Sequence Match ( AT2G15570.1 )
(BLAST)

001: MAISSSSSSI CFNPTRFHTA RHISSPSRLF PVTSFSPRSL RFSDRRSLLS SSASRLRLSP LCVRDSRAAE VTQRSWEDSV LKSETPVLVE FYTSWCGPCR
101: MVHRIIDEIA GDYAGKLNCY LLNADNDLPV AEEYEIKAVP VVLLFKNGEK RESIMGTMPK EFYISAIERV LNS

Arabidopsis Description

ATHM3Thioredoxin superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IIH6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.