Factsheet for Zm00001d017379_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
plastid: 22065420
extracellular: 22192489
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 22192489 doi

K Witzel, M Shahzad, A Matros, HP Mock, KH Mühling

Institute of Plant Nutrition and Soil Science, Christian Albrechts University, Hermann-Rodewald-Strasse 2, 24118 Kiel, Germany. khmuehling@plantnutrition.uni-kiel.de.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d017793_P001
Zm00001d044874_P001
Zm00001d051589_P001
Zm00001d052194_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G15360.1	Zm00001d017793_P001	AT3G27960.1	21798944
AT3G15360.1	Zm00001d051589_P001	AT3G27960.1	21798944
AT3G15360.1	Zm00001d044874_P001	AT4G25200.1	21798944
AT3G15360.1	Zm00001d052194_P001	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d051250_P001	Maize	plastid	94.22	94.22
EES07212	Sorghum	plastid	94.22	93.68
Os02t0639900-01	Rice	plastid	72.83	72.83
VIT_00s0238g00110.t01	Wine grape	cytosol	26.59	64.79
Zm00001d002854_P001	Maize	plastid	64.16	60.99
GSMUA_Achr11P...	Banana	plastid	57.8	54.95
GSMUA_Achr1P00150_001	Banana	plastid	59.54	54.79
KRH55312	Soybean	nucleus, plastid	52.02	53.25
GSMUA_Achr5P20730_001	Banana	plastid	57.23	52.11
KRH26086	Soybean	plastid	52.02	51.43
Solyc07g063190.2.1	Tomato	plastid	50.29	47.8
PGSC0003DMT400032333	Potato	cytosol, extracellular, mitochondrion, plastid	50.29	47.8
KRH22105	Soybean	plastid	50.29	47.8
KRH27229	Soybean	plastid	48.55	46.15
GSMUA_Achr4P29990_001	Banana	plastid	60.69	44.3
VIT_19s0014g02890.t01	Wine grape	plastid	47.98	44.15
Solyc10g006970.2.1	Tomato	plastid	47.4	43.85
PGSC0003DMT400039743	Potato	plastid	45.09	43.58
GSMUA_Achr5P12100_001	Banana	plastid	61.85	43.5
PGSC0003DMT400064434	Potato	plastid	46.82	43.32
Solyc12g013810.1.1	Tomato	plastid	44.51	43.02
Zm00001d041804_P001	Maize	plastid	40.46	41.92
Bra001592.1-P	Field mustard	extracellular, plasma membrane	39.31	41.72
Zm00001d023707_P002	Maize	plastid	40.46	40.23
Bra027250.1-P	Field mustard	plastid	43.35	39.06
CDX97662	Canola	plastid	43.35	39.06
AT3G15360.1	Thale cress	plastid	43.35	38.86
CDX98554	Canola	plastid	42.77	38.54
CDX82437	Canola	endoplasmic reticulum	26.01	35.71
CDX75826	Canola	endoplasmic reticulum	25.43	34.65
Zm00001d003667_P002	Maize	plastid	30.64	28.19
Zm00001d026608_P001	Maize	plastid	27.17	26.86
Zm00001d001843_P001	Maize	plastid	27.17	26.55
Zm00001d042017_P002	Maize	plastid	23.12	23.95

Protein Annotations

MapMan:10.5.5	EntrezGene:100284385	Gene3D:3.40.30.10	ProteinID:AQK73038.1	UniProt:B4FV29	EMBL:BT040967
EMBL:EU965627	EMBL:EU968097	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623
GO:GO:0006662	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725
GO:GO:0045454	GO:GO:0055114	InterPro:IPR013766	PFAM:PF00085	PRINTS:PR00421	ScanProsite:PS00194
PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF356	SUPFAM:SSF52833	TIGRFAMs:TIGR01068	InterPro:Thioredoxin
InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI00017B81A7	EnsemblPlantsGene:Zm00001d017379	EnsemblPlants:Zm00001d017379_P001
EnsemblPlants:Zm00001d017379_T001	SEG:seg	:	:	:	:

Description

Thioredoxin M1 chloroplastic

Coordinates

chr5:-:193879485..193884702

Molecular Weight (calculated)

18487.5 Da

IEP (calculated)

9.330

GRAVY (calculated)

0.027

Length

173 amino acids

Sequence
(BLAST)

001: MASRLAVAVA VAAPASSPSP VGTVAPPRVA LRRGLPPTWH ALRALPRSRG AAVVCQAQGG QDTAIQVPDV SKSTWQSLVV ESELPVLVQF WASWCGPCKM
101: IDPIVGKLSK EYEGKLKCYK LNTDENPDIA TQFGIRSIPT MMIFKNGEKK DAVIGAVPES TLVTCIDKYV GGR

Best Arabidopsis Sequence Match ( AT3G15360.1 )
(BLAST)

001: MASLLDSVTV TRVFSLPIAA SVSSSSAAPS VSRRRISPAR FLEFRGLKSS RSLVTQSASL GANRRTRIAR GGRIACEAQD TTAAAVEVPN LSDSEWQTKV
101: LESDVPVLVE FWAPWCGPCR MIHPIVDQLA KDFAGKFKFY KINTDESPNT ANRYGIRSVP TVIIFKGGEK KDSIIGAVPR ETLEKTIERF LVE

Arabidopsis Description

ATHM4TRX-M4 [Source:UniProtKB/TrEMBL;Acc:A0A178VJ83]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.