Factsheet for PGSC0003DMT400039743

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001405
PGSC0003DMT400012249

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G15360.1	PGSC0003DMT400001405	AT3G27960.1	21798944
AT3G15360.1	PGSC0003DMT400012249	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g013810.1.1	Tomato	plastid	97.77	97.77
VIT_00s0238g00110.t01	Wine grape	cytosol	27.37	69.01
PGSC0003DMT400032333	Potato	cytosol, extracellular, mitochondrion, plastid	67.04	65.93
PGSC0003DMT400064434	Potato	plastid	68.16	65.24
KRH55312	Soybean	nucleus, plastid	53.63	56.8
KRH22105	Soybean	plastid	56.98	56.04
KRH26086	Soybean	plastid	54.75	56.0
KRH27229	Soybean	plastid	55.31	54.4
VIT_19s0014g02890.t01	Wine grape	plastid	56.42	53.72
HORVU2Hr1G091130.1	Barley	mitochondrion	41.9	52.82
Bra001592.1-P	Field mustard	extracellular, plasma membrane	46.37	50.92
AT3G15360.1	Thale cress	plastid	53.07	49.22
Bra027250.1-P	Field mustard	plastid	51.96	48.44
CDX98554	Canola	plastid	51.96	48.44
CDX97662	Canola	plastid	51.96	48.44
GSMUA_Achr1P00150_001	Banana	plastid	49.72	47.34
CDX82437	Canola	endoplasmic reticulum	32.96	46.83
TraesCS2D01G368700.1	Wheat	plastid	47.49	46.7
Os02t0639900-01	Rice	plastid	44.13	45.66
TraesCS2B01G389500.1	Wheat	plastid	46.93	45.41
TraesCS2A01G372500.1	Wheat	plastid	46.37	45.11
Zm00001d051250_P001	Maize	plastid	43.58	45.09
Zm00001d017379_P001	Maize	plastid	43.58	45.09
CDX75826	Canola	endoplasmic reticulum	31.84	44.88
EES07212	Sorghum	plastid	43.58	44.83
PGSC0003DMT400055831	Potato	mitochondrion, plastid	45.81	44.81
Zm00001d002854_P001	Maize	plastid	45.25	44.51
Os04t0530600-01	Rice	plastid	44.13	43.89
GSMUA_Achr5P20730_001	Banana	plastid	45.25	42.63
EES12552	Sorghum	plastid	43.02	41.4
GSMUA_Achr11P...	Banana	plastid	41.9	41.21
HORVU2Hr1G091200.5	Barley	cytosol	41.9	40.54
GSMUA_Achr4P29990_001	Banana	plastid	47.49	35.87
GSMUA_Achr5P12100_001	Banana	plastid	49.16	35.77
PGSC0003DMT400066596	Potato	plastid	31.28	31.11
PGSC0003DMT400061915	Potato	cytosol, plastid	25.7	27.06
PGSC0003DMT400042164	Potato	cytosol, plastid	25.14	24.46

Protein Annotations

MapMan:10.5.5	EntrezGene:102587966	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005623	GO:GO:0006662	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015035
GO:GO:0019725	GO:GO:0045454	GO:GO:0055114	InterPro:IPR013766	UniProt:M1B8P1	PFAM:PF00085
EnsemblPlantsGene:PGSC0003DMG400015360	PGSC:PGSC0003DMG400015360	EnsemblPlants:PGSC0003DMT400039743	PRINTS:PR00421	ScanProsite:PS00194	PFscan:PS51352
PANTHER:PTHR10438	PANTHER:PTHR10438:SF367	SUPFAM:SSF52833	TIGRFAMs:TIGR01068	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf
InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI0002949275	RefSeq:XP_006358980.1	SEG:seg	:

Description

Thioredoxin m(Mitochondrial)-type [Source:PGSC_GENE;Acc:PGSC0003DMG400015360]

Coordinates

chr12:+:624725..627236

Molecular Weight (calculated)

19366.5 Da

IEP (calculated)

9.741

GRAVY (calculated)

0.102

Length

179 amino acids

Sequence
(BLAST)

001: MAGLLETIAV PRAAAGAASP SLSPVAGRRS SVKFSVFNGL KIQSTRSSVS FSSFTKSVPR RGGRIVCEAQ DTAVLVPGVN DQSWETLVIG SKLPVLVEFW
101: APWCGPCRMI HPVIDELSQE FADKFKFFKV NTDESPGIAT RYGIRSIPTV MIFKDGEKKD TVIGAVPKTT LTACIEKFL

Best Arabidopsis Sequence Match ( AT3G15360.1 )
(BLAST)

001: MASLLDSVTV TRVFSLPIAA SVSSSSAAPS VSRRRISPAR FLEFRGLKSS RSLVTQSASL GANRRTRIAR GGRIACEAQD TTAAAVEVPN LSDSEWQTKV
101: LESDVPVLVE FWAPWCGPCR MIHPIVDQLA KDFAGKFKFY KINTDESPNT ANRYGIRSVP TVIIFKGGEK KDSIIGAVPR ETLEKTIERF LVE

Arabidopsis Description

ATHM4TRX-M4 [Source:UniProtKB/TrEMBL;Acc:A0A178VJ83]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.