Factsheet for Os04t0530600-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

plastid: 21961694

plastid: 17189339

gfp PMID: 21961694 doi

Y Zhang, J Su, S Duan, Y Ao, J Dai, J Liu, P Wang, Y Li, B Liu, D Feng, J Wang, H Wang

State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-sen University, Guangzhou 510275, P, R, China.

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0708400-01
Os02t0758000-01
Os06t0219500-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G15360.1	Os02t0708400-01	AT3G27960.1	21798944
AT3G15360.1	Os02t0758000-01	AT4G25200.1	21798944
AT3G15360.1	Os06t0219500-00	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G091130.1	Barley	mitochondrion	67.78	85.92
TraesCS2D01G368700.1	Wheat	plastid	78.33	77.47
TraesCS2A01G372500.1	Wheat	plastid	78.89	77.17
TraesCS2B01G389500.1	Wheat	plastid	78.33	76.22
EES12552	Sorghum	plastid	74.44	72.04
Zm00001d002854_P001	Maize	plastid	71.11	70.33
Os02t0639900-01	Rice	plastid	67.22	69.94
HORVU2Hr1G091200.5	Barley	cytosol	67.78	65.95
VIT_00s0238g00110.t01	Wine grape	cytosol	25.0	63.38
GSMUA_Achr11P...	Banana	plastid	57.78	57.14
GSMUA_Achr1P00150_001	Banana	plastid	59.44	56.91
GSMUA_Achr5P20730_001	Banana	plastid	57.78	54.74
KRH26086	Soybean	plastid	49.44	50.86
KRH55312	Soybean	nucleus, plastid	47.22	50.3
KRH22105	Soybean	plastid	50.0	49.45
KRH27229	Soybean	plastid	48.33	47.8
GSMUA_Achr4P29990_001	Banana	plastid	60.56	45.99
PGSC0003DMT400032333	Potato	cytosol, extracellular, mitochondrion, plastid	46.11	45.6
VIT_19s0014g02890.t01	Wine grape	plastid	47.22	45.21
Solyc07g063190.2.1	Tomato	plastid	45.56	45.05
PGSC0003DMT400064434	Potato	plastid	46.67	44.92
Solyc10g006970.2.1	Tomato	plastid	46.11	44.38
PGSC0003DMT400039743	Potato	plastid	43.89	44.13
Solyc12g013810.1.1	Tomato	plastid	43.89	44.13
GSMUA_Achr5P12100_001	Banana	plastid	60.0	43.9
Os12t0188700-02	Rice	plastid	38.89	40.7
Bra001592.1-P	Field mustard	extracellular, plasma membrane	36.67	40.49
CDX97662	Canola	plastid	41.67	39.06
Bra027250.1-P	Field mustard	plastid	41.67	39.06
AT3G15360.1	Thale cress	plastid	41.67	38.86
CDX98554	Canola	plastid	41.11	38.54
CDX82437	Canola	endoplasmic reticulum	25.0	35.71
CDX75826	Canola	endoplasmic reticulum	25.0	35.43
Os01t0963400-01	Rice	cytosol	22.22	32.79
Os04t0430800-01	Rice	plastid	30.0	30.86
Os04t0676100-01	Rice	extracellular, plastid	26.67	26.67

Protein Annotations

MapMan:10.5.5	Gene3D:3.40.30.10	EntrezGene:4336484	EMBL:AK069195	ProteinID:BAF15305.1	ProteinID:BAS90209.1
ProteinID:CAD41211.2	ProteinID:CAE03864.2	ProteinID:EAZ31428.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004791
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006662	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0015035
GO:GO:0016671	GO:GO:0019725	GO:GO:0034599	GO:GO:0045454	GO:GO:0047134	GO:GO:0055114
GO:GO:0098869	InterPro:IPR013766	EnsemblPlantsGene:Os04g0530600	EnsemblPlants:Os04t0530600-01	PFAM:PF00085	PRINTS:PR00421
ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF356	UniProt:Q7X8R5	SUPFAM:SSF52833
TIGRFAMs:TIGR01068	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI00001B10D9
RefSeq:XP_015633750.1	SEG:seg	:	:	:	:

Description

OsTRX m2Similar to Thioredoxin 1 (TRX-1) (Thioredoxin M). (Os04t0530600-01)

Coordinates

chr4:-:26540478..26542966

Molecular Weight (calculated)

19148.0 Da

IEP (calculated)

9.253

GRAVY (calculated)

-0.107

Length

180 amino acids

Sequence
(BLAST)

001: MASALAASTA VCSSPLASAS ASASSARRLR AVPPSRGIRY QALRADSGFA GNRRGGGRGA SVVCAVQGQD TSIQVPEVTK STWQSLVMES ELPVLVGYWA
101: TWCGPCKMID PVVGKLSKEY EGKLKCYKLN TDENPDIASQ YGVRSIPTMM IFKNGEKKDA VIGAVPESTL IASIEKFVER

Best Arabidopsis Sequence Match ( AT3G15360.1 )
(BLAST)

001: MASLLDSVTV TRVFSLPIAA SVSSSSAAPS VSRRRISPAR FLEFRGLKSS RSLVTQSASL GANRRTRIAR GGRIACEAQD TTAAAVEVPN LSDSEWQTKV
101: LESDVPVLVE FWAPWCGPCR MIHPIVDQLA KDFAGKFKFY KINTDESPNT ANRYGIRSVP TVIIFKGGEK KDSIIGAVPR ETLEKTIERF LVE

Arabidopsis Description

ATHM4TRX-M4 [Source:UniProtKB/TrEMBL;Acc:A0A178VJ83]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.