Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU7Hr1G010470.2 | Barley | cytosol | 49.18 | 81.08 |
| HORVU2Hr1G087710.1 | Barley | cytosol | 49.18 | 73.17 |
| CDY14949 | Canola | cytosol | 64.75 | 68.7 |
| Zm00001d042017_P002 | Maize | plastid | 86.07 | 62.87 |
| EES02107 | Sorghum | plastid | 87.7 | 62.57 |
| TraesCS3B01G577800.1 | Wheat | plastid | 82.79 | 61.59 |
| TraesCS3A01G509000.1 | Wheat | plastid | 81.97 | 60.61 |
| TraesCS3D01G516800.1 | Wheat | plastid | 81.15 | 60.0 |
| GSMUA_Achr1P13230_001 | Banana | extracellular | 59.84 | 54.07 |
| HORVU5Hr1G116290.1 | Barley | plastid | 59.84 | 52.52 |
| GSMUA_Achr6P25720_001 | Banana | plastid | 70.49 | 50.59 |
| AT1G43560.1 | Thale cress | plastid | 68.85 | 50.3 |
| VIT_18s0072g00400.t01 | Wine grape | plastid | 72.13 | 50.29 |
| KRG91663 | Soybean | plastid | 71.31 | 49.71 |
| CDX87569 | Canola | plastid | 68.85 | 48.84 |
| Bra015721.1-P | Field mustard | plastid | 68.85 | 48.84 |
| AT1G76760.1 | Thale cress | plastid | 68.85 | 48.84 |
| KRH35133 | Soybean | plastid | 69.67 | 48.57 |
| CDX88314 | Canola | plastid | 68.03 | 48.26 |
| PGSC0003DMT400061915 | Potato | cytosol, plastid | 66.39 | 47.65 |
| HORVU3Hr1G111930.2 | Barley | plastid | 80.33 | 47.34 |
| Solyc04g071560.2.1 | Tomato | plastid | 65.57 | 45.98 |
| Os04t0530600-01 | Rice | plastid | 32.79 | 22.22 |
| Os04t0676100-01 | Rice | extracellular, plastid | 32.79 | 22.22 |
| Os02t0639900-01 | Rice | plastid | 30.33 | 21.39 |
| Os04t0430800-01 | Rice | plastid | 30.33 | 21.14 |
| Os12t0188700-02 | Rice | plastid | 29.51 | 20.93 |
Protein Annotations
| MapMan:10.5.8 | Gene3D:3.40.30.10 | UniProt:A0A0P0VD48 | ProteinID:BAS76356.1 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004791 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006662 |
| GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009987 |
| GO:GO:0015035 | GO:GO:0016671 | GO:GO:0019725 | GO:GO:0034599 | GO:GO:0045454 | GO:GO:0047134 |
| GO:GO:0055114 | GO:GO:0098869 | InterPro:IPR013766 | EnsemblPlantsGene:Os01g0963400 | EnsemblPlants:Os01t0963400-01 | PFAM:PF00085 |
| PIRSF:PIRSF000077 | PRINTS:PR00421 | ScanProsite:PS00194 | PFscan:PS51352 | PANTHER:PTHR10438 | PANTHER:PTHR10438:SF280 |
| SUPFAM:SSF52833 | TIGRFAMs:TIGR01068 | InterPro:Thioredoxin | InterPro:Thioredoxin-like_sf | InterPro:Thioredoxin_CS | InterPro:Thioredoxin_domain |
| UniParc:UPI0000DD8EE1 | : | : | : | : | : |
Description
Thioredoxin family protein. (Os01t0963400-01)
Coordinates
chr1:+:42451284..42454309
Molecular Weight (calculated)
13733.6 Da
IEP (calculated)
8.468
GRAVY (calculated)
-0.236
Length
122 amino acids
Sequence
(BLAST)
(BLAST)
001: AAAPSRRGAT LRVQAKKQTF SSFDELLEKS EKPVLVDFYA TWCGPCQYMV PILQEVSEKL GDKIQVVKID TEKYTSIANR YQIEALPTFI IFKNGKPCHR
101: FEGALPANQL IQQIESALEV AK
101: FEGALPANQL IQQIESALEV AK
001: MASISLSSST VPSLNSKESS GVSAFASRSI SAVKFQFPVR RVRTGDLKFP SLSSTTRCTP RRIEAKKQTF DSFEDLLVNS DKPVLVDYYA TWCGPCQFMV
101: PILNEVSETL KDKIQVVKID TEKYPSIANK YKIEALPTFI LFKDGEPCDR FEGALTAKQL IQRIEDSLKV KP
101: PILNEVSETL KDKIQVVKID TEKYPSIANK YKIEALPTFI LFKDGEPCDR FEGALTAKQL IQRIEDSLKV KP
Arabidopsis Description
ATY1TY1 [Source:UniProtKB/TrEMBL;Acc:A0A178WE50]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.