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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • extracellular 1
  • endoplasmic reticulum 2
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • cytosol 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:cytosol, mitochondrion, secretory
BaCelLo:secretory
EpiLoc:endoplasmic reticulum
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
extracellular: 18372294
nucleus: 23777608
plasma membrane: 27800704
plastid: 27992503
extracellular: 28232208
msms PMID: 23777608 doi
H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID: 18372294 doi
T Aki, M Shigyo, R Nakano, T Yoneyama, S Yanagisawa
Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, 113-8657 Japan.
msms PMID: 28232208 doi
Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
VIT_14s0060g02270.t01 Wine grape cytosol 87.5 87.5
VIT_05s0020g01170.t01 Wine grape cytosol 86.9 87.43
GSMUA_Achr3P00730_001 Banana cytosol 85.71 86.23
TraesCS4A01G169100.1 Wheat cytosol 85.71 85.71
GSMUA_Achr7P03740_001 Banana cytosol 85.12 85.63
GSMUA_Achr1P14760_001 Banana cytosol 85.12 85.63
KRH12062 Soybean cytosol, nucleus 85.12 85.63
KRH37101 Soybean cytosol, endoplasmic reticulum, nucleus 85.12 85.12
KRH33890 Soybean cytosol, nucleus 85.12 85.12
TraesCS4B01G144200.1 Wheat cytosol, golgi, plastid, unclear 85.12 85.12
Solyc01g099780.2.1 Tomato cytosol, nucleus, unclear 83.93 83.93
TraesCS4D01G145400.1 Wheat cytosol 64.88 83.85
GSMUA_Achr9P20280_001 Banana cytosol 83.33 83.83
Solyc01g099770.2.1 Tomato plastid 83.33 83.33
HORVU4Hr1G033200.1 Barley cytosol 83.33 83.33
OQU84170 Sorghum cytosol 81.55 82.04
Zm00001d014957_P001 Maize plastid 79.76 80.24
AT3G05540.1 Thale cress cytosol 79.17 79.17
CDY28353 Canola cytosol 77.38 77.38
CDX82396 Canola cytosol 76.79 76.79
Bra001637.1-P Field mustard cytosol 76.79 76.79
Bra021187.1-P Field mustard cytosol 76.79 76.79
Bra022172.1-P Field mustard cytosol 76.79 76.79
CDX92089 Canola cytosol 76.79 76.79
CDY34963 Canola cytosol 76.79 76.79
CDY43119 Canola cytosol 76.79 76.79
AT3G16640.1 Thale cress cytosol 76.19 76.19
CDX75889 Canola cytosol 75.6 75.6
TraesCS6B01G002800.1 Wheat cytosol 76.79 75.0
Zm00001d014954_P002 Maize cytosol 79.17 73.89
PGSC0003DMT400063575 Potato cytosol 77.38 72.22
GSMUA_Achr11P... Banana cytosol 67.86 71.7
CDY18821 Canola cytosol 37.5 70.0
Bra040541.1-P Field mustard cytosol 37.5 70.0
KXG28492 Sorghum cytosol 55.95 69.63
GSMUA_Achr5P00170_001 Banana cytosol 58.33 65.33
KRG92901 Soybean cytosol 54.76 55.09
Protein Annotations
Gene3D:2.170.150.10MapMan:35.1EntrezGene:4351061ProteinID:ABA95199.1EMBL:AK105453ProteinID:ALF37646.1
EMBL:AP008217ProteinID:BAF28768.1ProteinID:BAT15135.1EMBL:D12626ProteinID:EAZ19189.1EMBL:EU268001
GO:GO:0003674GO:GO:0005488GO:GO:0005509GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0008017GO:GO:0008150GO:GO:0009987GO:GO:0030154
EMBL:GQ848060InterPro:IPR011323InterPro:IPR034737EMBL:KF285442InterPro:Mss4-like_sfInterPro:Mss4/transl-control_tumour
EnsemblPlantsGene:Os11g0660500EnsemblPlants:Os11t0660500-01UniProt:P35681PFAM:PF00838PRINTS:PR01653ScanProsite:PS01002
ScanProsite:PS01003PFscan:PS51797PANTHER:PTHR11991PANTHER:PTHR11991:SF0UniProt:Q0IR97SUPFAM:SSF51316
InterPro:TCTPInterPro:Translation_control_tumour_CSInterPro:Translational_control_tumour_pUniParc:UPI0000136B32RefSeq:XP_015617060.1SEG:seg
Description
translationally controlled tumor proteinTranslationally controlled tumor protein, Mercury tolerance (Os11t0660500-01);Splicing variant of OsTCTPa (Os11t0660500-02)
Coordinates
chr11:-:26510873..26513127
Molecular Weight (calculated)
18947.3 Da
IEP (calculated)
4.275
GRAVY (calculated)
-0.383
Length
168 amino acids
Sequence
(BLAST)
001: MLVYQDLLTG DELLSDSFPY REIENGILWE VDGKWVVQGA IDVDIGANPS AEGGGDDEGV DDQAVKVVDI VDTFRLQEQP PFDKKQFVTF MKRYIKNLSA
101: KLDAEKQEEF KKNIEGATKY LLGKLKDLQF FVGESMHDDG GLVFAYYKDG ATDPTFLYFS HGLKEVKC
Best Arabidopsis Sequence Match ( AT3G16640.1 )
(BLAST)
001: MLVYQDLLTG DELLSDSFPY KEIENGILWE VEGKWVTVGA VDVNIGANPS AEEGGEDEGV DDSTQKVVDI VDTFRLQEQP TYDKKGFIAY IKKYIKLLTP
101: KLSEEDQAVF KKGIEGATKF LLPRLSDFQF FVGEGMHDDS TLVFAYYKEG STNPTFLYFA HGLKEVKC
Arabidopsis Description
TCTP1Translationally-controlled tumor protein 1 [Source:UniProtKB/Swiss-Prot;Acc:P31265]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.