Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 2
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 4
- mitochondrion 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
extracellular:
18372294
nucleus: 23777608 plasma membrane: 27800704 plastid: 27992503 extracellular: 28232208 |
msms PMID:
23777608
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID:
18372294
doi
Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, 113-8657 Japan.
msms PMID:
28232208
doi
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
Os01t0218200-00 | |
Os05t0210600-01 | |
Os05t0587300-01 | |
Os10t0114400-01 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT3G16640.1 | Os10t0114400-01 | AT2G01950.1 | 19000166 |
AT3G16640.1 | Os01t0218200-00 | AT2G42580.1 | 19000166 |
AT3G16640.1 | Os05t0210600-01 | AT2G42580.1 | 19000166 |
AT3G16640.1 | Os05t0587300-01 | AT2G42580.1 | 19000166 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
VIT_14s0060g02270.t01 | Wine grape | cytosol | 87.5 | 87.5 |
VIT_05s0020g01170.t01 | Wine grape | cytosol | 86.9 | 87.43 |
GSMUA_Achr3P00730_001 | Banana | cytosol | 85.71 | 86.23 |
TraesCS4A01G169100.1 | Wheat | cytosol | 85.71 | 85.71 |
GSMUA_Achr7P03740_001 | Banana | cytosol | 85.12 | 85.63 |
GSMUA_Achr1P14760_001 | Banana | cytosol | 85.12 | 85.63 |
KRH12062 | Soybean | cytosol, nucleus | 85.12 | 85.63 |
KRH37101 | Soybean | cytosol, endoplasmic reticulum, nucleus | 85.12 | 85.12 |
KRH33890 | Soybean | cytosol, nucleus | 85.12 | 85.12 |
TraesCS4B01G144200.1 | Wheat | cytosol, golgi, plastid, unclear | 85.12 | 85.12 |
Solyc01g099780.2.1 | Tomato | cytosol, nucleus, unclear | 83.93 | 83.93 |
TraesCS4D01G145400.1 | Wheat | cytosol | 64.88 | 83.85 |
GSMUA_Achr9P20280_001 | Banana | cytosol | 83.33 | 83.83 |
Solyc01g099770.2.1 | Tomato | plastid | 83.33 | 83.33 |
HORVU4Hr1G033200.1 | Barley | cytosol | 83.33 | 83.33 |
OQU84170 | Sorghum | cytosol | 81.55 | 82.04 |
Zm00001d014957_P001 | Maize | plastid | 79.76 | 80.24 |
AT3G05540.1 | Thale cress | cytosol | 79.17 | 79.17 |
CDY28353 | Canola | cytosol | 77.38 | 77.38 |
CDX82396 | Canola | cytosol | 76.79 | 76.79 |
Bra001637.1-P | Field mustard | cytosol | 76.79 | 76.79 |
Bra021187.1-P | Field mustard | cytosol | 76.79 | 76.79 |
Bra022172.1-P | Field mustard | cytosol | 76.79 | 76.79 |
CDX92089 | Canola | cytosol | 76.79 | 76.79 |
CDY34963 | Canola | cytosol | 76.79 | 76.79 |
CDY43119 | Canola | cytosol | 76.79 | 76.79 |
AT3G16640.1 | Thale cress | cytosol | 76.19 | 76.19 |
CDX75889 | Canola | cytosol | 75.6 | 75.6 |
TraesCS6B01G002800.1 | Wheat | cytosol | 76.79 | 75.0 |
Zm00001d014954_P002 | Maize | cytosol | 79.17 | 73.89 |
PGSC0003DMT400063575 | Potato | cytosol | 77.38 | 72.22 |
GSMUA_Achr11P... | Banana | cytosol | 67.86 | 71.7 |
CDY18821 | Canola | cytosol | 37.5 | 70.0 |
Bra040541.1-P | Field mustard | cytosol | 37.5 | 70.0 |
KXG28492 | Sorghum | cytosol | 55.95 | 69.63 |
GSMUA_Achr5P00170_001 | Banana | cytosol | 58.33 | 65.33 |
KRG92901 | Soybean | cytosol | 54.76 | 55.09 |
Protein Annotations
Gene3D:2.170.150.10 | MapMan:35.1 | EntrezGene:4351061 | ProteinID:ABA95199.1 | EMBL:AK105453 | ProteinID:ALF37646.1 |
EMBL:AP008217 | ProteinID:BAF28768.1 | ProteinID:BAT15135.1 | EMBL:D12626 | ProteinID:EAZ19189.1 | EMBL:EU268001 |
GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
GO:GO:0005623 | GO:GO:0005737 | GO:GO:0008017 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0030154 |
EMBL:GQ848060 | InterPro:IPR011323 | InterPro:IPR034737 | EMBL:KF285442 | InterPro:Mss4-like_sf | InterPro:Mss4/transl-control_tumour |
EnsemblPlantsGene:Os11g0660500 | EnsemblPlants:Os11t0660500-01 | UniProt:P35681 | PFAM:PF00838 | PRINTS:PR01653 | ScanProsite:PS01002 |
ScanProsite:PS01003 | PFscan:PS51797 | PANTHER:PTHR11991 | PANTHER:PTHR11991:SF0 | UniProt:Q0IR97 | SUPFAM:SSF51316 |
InterPro:TCTP | InterPro:Translation_control_tumour_CS | InterPro:Translational_control_tumour_p | UniParc:UPI0000136B32 | RefSeq:XP_015617060.1 | SEG:seg |
Description
translationally controlled tumor proteinTranslationally controlled tumor protein, Mercury tolerance (Os11t0660500-01);Splicing variant of OsTCTPa (Os11t0660500-02)
Coordinates
chr11:-:26510873..26513127
Molecular Weight (calculated)
18947.3 Da
IEP (calculated)
4.275
GRAVY (calculated)
-0.383
Length
168 amino acids
Sequence
(BLAST)
(BLAST)
001: MLVYQDLLTG DELLSDSFPY REIENGILWE VDGKWVVQGA IDVDIGANPS AEGGGDDEGV DDQAVKVVDI VDTFRLQEQP PFDKKQFVTF MKRYIKNLSA
101: KLDAEKQEEF KKNIEGATKY LLGKLKDLQF FVGESMHDDG GLVFAYYKDG ATDPTFLYFS HGLKEVKC
101: KLDAEKQEEF KKNIEGATKY LLGKLKDLQF FVGESMHDDG GLVFAYYKDG ATDPTFLYFS HGLKEVKC
001: MLVYQDLLTG DELLSDSFPY KEIENGILWE VEGKWVTVGA VDVNIGANPS AEEGGEDEGV DDSTQKVVDI VDTFRLQEQP TYDKKGFIAY IKKYIKLLTP
101: KLSEEDQAVF KKGIEGATKF LLPRLSDFQF FVGEGMHDDS TLVFAYYKEG STNPTFLYFA HGLKEVKC
101: KLSEEDQAVF KKGIEGATKF LLPRLSDFQF FVGEGMHDDS TLVFAYYKEG STNPTFLYFA HGLKEVKC
Arabidopsis Description
TCTP1Translationally-controlled tumor protein 1 [Source:UniProtKB/Swiss-Prot;Acc:P31265]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.