Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 2
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P14760_001 | Banana | cytosol | 92.22 | 92.22 |
| GSMUA_Achr3P00730_001 | Banana | cytosol | 92.22 | 92.22 |
| GSMUA_Achr7P03740_001 | Banana | cytosol | 90.42 | 90.42 |
| VIT_14s0060g02270.t01 | Wine grape | cytosol | 89.22 | 88.69 |
| KRH12062 | Soybean | cytosol, nucleus | 88.02 | 88.02 |
| KRH37101 | Soybean | cytosol, endoplasmic reticulum, nucleus | 88.02 | 87.5 |
| KRH33890 | Soybean | cytosol, nucleus | 88.02 | 87.5 |
| OQU84170 | Sorghum | cytosol | 83.83 | 83.83 |
| Os11t0660500-01 | Rice | extracellular | 83.83 | 83.33 |
| AT3G05540.1 | Thale cress | cytosol | 82.04 | 81.55 |
| Zm00001d014957_P001 | Maize | plastid | 80.84 | 80.84 |
| HORVU4Hr1G033200.1 | Barley | cytosol | 80.24 | 79.76 |
| TraesCS4B01G144200.1 | Wheat | cytosol, golgi, plastid, unclear | 77.84 | 77.38 |
| TraesCS4A01G169100.1 | Wheat | cytosol | 77.25 | 76.79 |
| TraesCS4D01G145400.1 | Wheat | cytosol | 58.08 | 74.62 |
| Zm00001d014954_P002 | Maize | cytosol | 80.24 | 74.44 |
| GSMUA_Achr11P... | Banana | cytosol | 69.46 | 72.96 |
| TraesCS6B01G002800.1 | Wheat | cytosol | 73.05 | 70.93 |
| KXG28492 | Sorghum | cytosol | 56.89 | 70.37 |
| GSMUA_Achr5P00170_001 | Banana | cytosol | 62.87 | 70.0 |
| CDY18821 | Canola | cytosol | 37.13 | 68.89 |
| Bra040541.1-P | Field mustard | cytosol | 37.13 | 68.89 |
| KRG92901 | Soybean | cytosol | 54.49 | 54.49 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr9P20280_001 | EnsemblPlants:GSMUA_Achr9T20280_001 | EnsemblPlantsGene:GSMUA_Achr9G20280_001 | Gene3D:2.170.150.10 | InterPro:IPR011323 | InterPro:IPR034737 |
| InterPro:Mss4-like_sf | InterPro:Mss4/transl-control_tumour | InterPro:TCTP | InterPro:Translation_control_tumour_CS | InterPro:Translational_control_tumour_p | PANTHER:PTHR11991 |
| PANTHER:PTHR11991:SF0 | PFAM:PF00838 | PFscan:PS51797 | PRINTS:PR01653 | ScanProsite:PS01002 | ScanProsite:PS01003 |
| SUPFAM:SSF51316 | UniParc:UPI00029631E7 | UniProt:M0U1Y7 | MapMan:35.1 | : | : |
Description
Translationally-controlled tumor protein homolog [Source:GMGC_GENE;Acc:GSMUA_Achr9G20280_001]
Coordinates
chr9:-:24196413..24199561
Molecular Weight (calculated)
18871.5 Da
IEP (calculated)
4.349
GRAVY (calculated)
-0.260
Length
167 amino acids
Sequence
(BLAST)
(BLAST)
001: MLVYQDLLTG DELLSDSFTS KEIENGMLWE VEGKWVVKGA VDVDIGANPS AEGGEDEGVD DTATKVVDIV DTFRLQEQPA FDKKQFVTYI KRYIKLLTPK
101: LDEEKQELFK KHIEGATKLL LSKLKDLQFF VGESMHDDGS LVVAYYKDGA IDPTFLYFAY GLKEIKC
101: LDEEKQELFK KHIEGATKLL LSKLKDLQFF VGESMHDDGS LVVAYYKDGA IDPTFLYFAY GLKEIKC
001: MLVYQDLLTG DELLSDSFPY KEIENGILWE VEGKWVTVGA VDVNIGANPS AEEGGEDEGV DDSTQKVVDI VDTFRLQEQP TYDKKGFIAY IKKYIKLLTP
101: KLSEEDQAVF KKGIEGATKF LLPRLSDFQF FVGEGMHDDS TLVFAYYKEG STNPTFLYFA HGLKEVKC
101: KLSEEDQAVF KKGIEGATKF LLPRLSDFQF FVGEGMHDDS TLVFAYYKEG STNPTFLYFA HGLKEVKC
Arabidopsis Description
TCTP1Translationally-controlled tumor protein 1 [Source:UniProtKB/Swiss-Prot;Acc:P31265]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.