CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra040541.1-P	Field mustard	cytosol	37.72	70.0
CDY18821	Canola	cytosol	37.72	70.0
TraesCS4D01G145400.1	Wheat	cytosol	47.9	61.54
KRH33890	Soybean	cytosol, nucleus	61.68	61.31
GSMUA_Achr3P00730_001	Banana	cytosol	55.69	55.69
KXG28492	Sorghum	cytosol	44.31	54.81
Os11t0660500-01	Rice	extracellular	55.09	54.76
GSMUA_Achr5P00170_001	Banana	cytosol	49.1	54.67
GSMUA_Achr9P20280_001	Banana	cytosol	54.49	54.49
GSMUA_Achr1P14760_001	Banana	cytosol	54.49	54.49
HORVU4Hr1G033200.1	Barley	cytosol	54.49	54.17
GSMUA_Achr11P...	Banana	cytosol	50.3	52.83
GSMUA_Achr7P03740_001	Banana	cytosol	52.69	52.69
KRH12062	Soybean	cytosol, nucleus	52.69	52.69
KRH37101	Soybean	cytosol, endoplasmic reticulum, nucleus	52.69	52.38
TraesCS4B01G144200.1	Wheat	cytosol, golgi, plastid, unclear	52.69	52.38
TraesCS4A01G169100.1	Wheat	cytosol	52.1	51.79
OQU84170	Sorghum	cytosol	50.9	50.9
AT3G05540.1	Thale cress	cytosol	50.9	50.6
Zm00001d014957_P001	Maize	plastid	49.1	49.1
Zm00001d014954_P002	Maize	cytosol	49.1	45.56
TraesCS6B01G002800.1	Wheat	cytosol	45.51	44.19

Protein Annotations

Gene3D:2.170.150.10	MapMan:35.1	UniProt:A0A0R0EGK7	EMBL:ACUP02012770	EnsemblPlantsGene:GLYMA_20G236600	GO:GO:0005575
GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0032502	GO:GO:0042127
InterPro:IPR011323	InterPro:IPR034737	EnsemblPlants:KRG92901	ProteinID:KRG92901	ProteinID:KRG92901.1	InterPro:Mss4-like_sf
InterPro:Mss4/transl-control_tumour	PFAM:PF00838	PRINTS:PR01653	ScanProsite:PS01002	PFscan:PS51797	PANTHER:PTHR11991
PANTHER:PTHR11991:SF0	SUPFAM:SSF51316	InterPro:TCTP	TMHMM:TMhelix	InterPro:Translation_control_tumour_CS	InterPro:Translational_control_tumour_p
UniParc:UPI0006ED8F60	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:-:46880381..46881176

Molecular Weight (calculated)

18838.1 Da

IEP (calculated)

9.342

GRAVY (calculated)

-0.138

Length

167 amino acids

Sequence
(BLAST)

001: MNVSLPFHVT PLSTTNPTEL KIRAITKWVV QGALNVDIGA NPSAEGGDED EGVGDQAVKV VDIVDTFRLQ EQPSFDKKQF IAYMKRYIKL LTAKLEGEKQ
101: ELFKKHIEGA TKSLISKLKD LQFYVLHLFF GYILGKVLLI QLLSTLPMDG RKSSAEHMQC RPRSYLI

Best Arabidopsis Sequence Match ( AT3G05540.1 )
(BLAST)

001: MLVYQDILTG DELLSDSFPY KEIENGMLWE VEGKWVVKGA MDFDIGANPG EEGGEDEGVD DQAVKVVDII DTFRLQEQPS FDKKQFVMFM KRYIKQLSPK
101: LDSENQELFK KHIESATKFL MSKLKDFQFF VGESMEGEEG SLVFAYYREG ATDPTFLYLA YGLKEIKC

Arabidopsis Description

Methionine sulfoxide reductase (MSS4-like) family protein [Source:TAIR;Acc:AT3G05540]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.