CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	secretory
EpiLoc:	endoplasmic reticulum
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH37101	Soybean	cytosol, endoplasmic reticulum, nucleus	98.2	97.62
GSMUA_Achr1P14760_001	Banana	cytosol	88.02	88.02
GSMUA_Achr9P20280_001	Banana	cytosol	88.02	88.02
GSMUA_Achr3P00730_001	Banana	cytosol	88.02	88.02
GSMUA_Achr7P03740_001	Banana	cytosol	86.23	86.23
Os11t0660500-01	Rice	extracellular	85.63	85.12
KRH33890	Soybean	cytosol, nucleus	83.83	83.33
OQU84170	Sorghum	cytosol	79.64	79.64
HORVU4Hr1G033200.1	Barley	cytosol	79.04	78.57
TraesCS4B01G144200.1	Wheat	cytosol, golgi, plastid, unclear	79.04	78.57
TraesCS4A01G169100.1	Wheat	cytosol	78.44	77.98
Zm00001d014957_P001	Maize	plastid	77.25	77.25
TraesCS4D01G145400.1	Wheat	cytosol	59.28	76.15
Zm00001d014954_P002	Maize	cytosol	76.65	71.11
TraesCS6B01G002800.1	Wheat	cytosol	72.46	70.35
GSMUA_Achr11P...	Banana	cytosol	66.47	69.81
KXG28492	Sorghum	cytosol	54.49	67.41
GSMUA_Achr5P00170_001	Banana	cytosol	58.68	65.33
KRG92901	Soybean	cytosol	52.69	52.69

Protein Annotations

Gene3D:2.170.150.10	MapMan:35.1	EMBL:ACUP02009262	EnsemblPlantsGene:GLYMA_15G148900	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008017	GO:GO:0008150	GO:GO:0009987	GO:GO:0030154	UniProt:I1MGM0	InterPro:IPR011323
InterPro:IPR034737	EnsemblPlants:KRH12062	ProteinID:KRH12062	ProteinID:KRH12062.1	InterPro:Mss4-like_sf	InterPro:Mss4/transl-control_tumour
PFAM:PF00838	PRINTS:PR01653	ScanProsite:PS01002	ScanProsite:PS01003	PFscan:PS51797	PANTHER:PTHR11991
PANTHER:PTHR11991:SF0	SUPFAM:SSF51316	InterPro:TCTP	InterPro:Translation_control_tumour_CS	InterPro:Translational_control_tumour_p	UniParc:UPI00023D20C3
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:-:12267989..12269894

Molecular Weight (calculated)

18982.6 Da

IEP (calculated)

4.326

GRAVY (calculated)

-0.232

Length

167 amino acids

Sequence
(BLAST)

001: MLVYQDLLTG DELLSDSFRY NEIENGMLWE VEGKWVVKGA VDVDIGANPS AEGGEDEGVD DAAVKVVDIV DTFRLQEQPA FDKKQFVTFM KRFIKNLTPK
101: LDAEKQELFK KHIEGATKYL LSKIKDFQFF VGESMNDDAC LVFAYYKDGA ADPTFLYFAY ALKEVKC

Best Arabidopsis Sequence Match ( AT3G05540.1 )
(BLAST)

001: MLVYQDILTG DELLSDSFPY KEIENGMLWE VEGKWVVKGA MDFDIGANPG EEGGEDEGVD DQAVKVVDII DTFRLQEQPS FDKKQFVMFM KRYIKQLSPK
101: LDSENQELFK KHIESATKFL MSKLKDFQFF VGESMEGEEG SLVFAYYREG ATDPTFLYLA YGLKEIKC

Arabidopsis Description

Methionine sulfoxide reductase (MSS4-like) family protein [Source:TAIR;Acc:AT3G05540]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.