Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 2
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G16640.1 | OQU92006 | AT2G01950.1 | 19000166 |
| AT3G16640.1 | EES01073 | AT2G42580.1 | 19000166 |
| AT3G16640.1 | EES02247 | AT2G42580.1 | 19000166 |
| AT3G16640.1 | OQU78515 | AT2G42580.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG28492 | Sorghum | cytosol | 70.06 | 86.67 |
| VIT_14s0060g02270.t01 | Wine grape | cytosol | 86.83 | 86.31 |
| VIT_05s0020g01170.t01 | Wine grape | cytosol | 85.03 | 85.03 |
| GSMUA_Achr9P20280_001 | Banana | cytosol | 83.83 | 83.83 |
| Zm00001d014957_P001 | Maize | plastid | 83.83 | 83.83 |
| KRH33890 | Soybean | cytosol, nucleus | 83.23 | 82.74 |
| GSMUA_Achr1P14760_001 | Banana | cytosol | 82.63 | 82.63 |
| GSMUA_Achr3P00730_001 | Banana | cytosol | 82.04 | 82.04 |
| Solyc01g099770.2.1 | Tomato | plastid | 82.04 | 81.55 |
| Os11t0660500-01 | Rice | extracellular | 82.04 | 81.55 |
| HORVU4Hr1G033200.1 | Barley | cytosol | 82.04 | 81.55 |
| GSMUA_Achr7P03740_001 | Banana | cytosol | 80.24 | 80.24 |
| TraesCS4B01G144200.1 | Wheat | cytosol, golgi, plastid, unclear | 80.24 | 79.76 |
| Solyc01g099780.2.1 | Tomato | cytosol, nucleus, unclear | 80.24 | 79.76 |
| KRH37101 | Soybean | cytosol, endoplasmic reticulum, nucleus | 80.24 | 79.76 |
| KRH12062 | Soybean | cytosol, nucleus | 79.64 | 79.64 |
| TraesCS4A01G169100.1 | Wheat | cytosol | 79.64 | 79.17 |
| AT3G16640.1 | Thale cress | cytosol | 78.44 | 77.98 |
| Bra001637.1-P | Field mustard | cytosol | 78.44 | 77.98 |
| Bra022172.1-P | Field mustard | cytosol | 78.44 | 77.98 |
| CDY43119 | Canola | cytosol | 78.44 | 77.98 |
| CDX92089 | Canola | cytosol | 78.44 | 77.98 |
| CDX82396 | Canola | cytosol | 78.44 | 77.98 |
| CDX75889 | Canola | cytosol | 78.44 | 77.98 |
| CDY34963 | Canola | cytosol | 77.84 | 77.38 |
| Bra021187.1-P | Field mustard | cytosol | 77.84 | 77.38 |
| Zm00001d014954_P002 | Maize | cytosol | 83.23 | 77.22 |
| AT3G05540.1 | Thale cress | cytosol | 76.65 | 76.19 |
| TraesCS4D01G145400.1 | Wheat | cytosol | 58.68 | 75.38 |
| CDY28353 | Canola | cytosol | 75.45 | 75.0 |
| PGSC0003DMT400063575 | Potato | cytosol | 76.65 | 71.11 |
| TraesCS6B01G002800.1 | Wheat | cytosol | 71.86 | 69.77 |
| GSMUA_Achr11P... | Banana | cytosol | 65.87 | 69.18 |
| GSMUA_Achr5P00170_001 | Banana | cytosol | 58.68 | 65.33 |
| Bra040541.1-P | Field mustard | cytosol | 34.73 | 64.44 |
| CDY18821 | Canola | cytosol | 34.73 | 64.44 |
| KRG92901 | Soybean | cytosol | 50.9 | 50.9 |
Protein Annotations
| Gene3D:2.170.150.10 | MapMan:35.1 | EntrezGene:8066491 | UniProt:A0A1Z5RK96 | InterPro:IPR011323 | InterPro:IPR034737 |
| InterPro:Mss4-like_sf | InterPro:Mss4/transl-control_tumour | EnsemblPlants:OQU84170 | ProteinID:OQU84170 | ProteinID:OQU84170.1 | PFAM:PF00838 |
| PRINTS:PR01653 | ScanProsite:PS01002 | ScanProsite:PS01003 | PFscan:PS51797 | PANTHER:PTHR11991 | PANTHER:PTHR11991:SF0 |
| EnsemblPlantsGene:SORBI_3004G006300 | SUPFAM:SSF51316 | InterPro:TCTP | InterPro:Translation_control_tumour_CS | InterPro:Translational_control_tumour_p | UniParc:UPI00016EE4BD |
| RefSeq:XP_002453140.1 | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr4:-:534524..536909
Molecular Weight (calculated)
18880.3 Da
IEP (calculated)
4.311
GRAVY (calculated)
-0.369
Length
167 amino acids
Sequence
(BLAST)
(BLAST)
001: MLVYQDLLSG DELLSDSFQY KEIFDGVLWE VEGKWVVKGA VDVDIGANPS AEGGEDEGVD DQTERVVDIV DTFRLQEQPT FDKKTFVTNI KRYIKNLTGK
101: LEPEKADEFK KGIEGATKFL LSKLKDLQFF VGESMHDDGS LVFAYYKEGA TDPTFLYFAH GLKEIKC
101: LEPEKADEFK KGIEGATKFL LSKLKDLQFF VGESMHDDGS LVFAYYKEGA TDPTFLYFAH GLKEIKC
001: MLVYQDLLTG DELLSDSFPY KEIENGILWE VEGKWVTVGA VDVNIGANPS AEEGGEDEGV DDSTQKVVDI VDTFRLQEQP TYDKKGFIAY IKKYIKLLTP
101: KLSEEDQAVF KKGIEGATKF LLPRLSDFQF FVGEGMHDDS TLVFAYYKEG STNPTFLYFA HGLKEVKC
101: KLSEEDQAVF KKGIEGATKF LLPRLSDFQF FVGEGMHDDS TLVFAYYKEG STNPTFLYFA HGLKEVKC
Arabidopsis Description
TCTP1Translationally-controlled tumor protein 1 [Source:UniProtKB/Swiss-Prot;Acc:P31265]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.