Factsheet for Solyc01g099780.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, nucleus, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, unclear
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	secretory
EpiLoc:	endoplasmic reticulum
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 25464976
unclear: 26455813

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g099770.2.1	Tomato	plastid	94.64	94.64
VIT_05s0020g01170.t01	Wine grape	cytosol	85.71	86.23
HORVU4Hr1G033200.1	Barley	cytosol	83.93	83.93
Os11t0660500-01	Rice	extracellular	83.93	83.93
PGSC0003DMT400063575	Potato	cytosol	89.88	83.89
TraesCS4A01G169100.1	Wheat	cytosol	82.74	82.74
TraesCS4B01G144200.1	Wheat	cytosol, golgi, plastid, unclear	82.74	82.74
TraesCS4D01G145400.1	Wheat	cytosol	63.69	82.31
OQU84170	Sorghum	cytosol	79.76	80.24
Zm00001d014957_P001	Maize	plastid	77.98	78.44
TraesCS6B01G002800.1	Wheat	cytosol	76.19	74.42
Zm00001d014954_P002	Maize	cytosol	77.38	72.22
KXG28492	Sorghum	cytosol	55.95	69.63

Protein Annotations

Gene3D:2.170.150.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008017	GO:GO:0008150
GO:GO:0009987	GO:GO:0030154	InterPro:IPR011323	InterPro:IPR034737	UniProt:K4B112	InterPro:Mss4-like_sf
InterPro:Mss4/transl-control_tumour	PFAM:PF00838	PRINTS:PR01653	ScanProsite:PS01002	ScanProsite:PS01003	PFscan:PS51797
PANTHER:PTHR11991	PANTHER:PTHR11991:SF0	SUPFAM:SSF51316	EnsemblPlantsGene:Solyc01g099780.2	EnsemblPlants:Solyc01g099780.2.1	InterPro:TCTP
InterPro:Translation_control_tumour_CS	InterPro:Translational_control_tumour_p	UniParc:UPI0002768F6C	SEG:seg	:	:

Description

No Description!

Coordinates

chr1:+:89920250..89922467

Molecular Weight (calculated)

18933.5 Da

IEP (calculated)

4.290

GRAVY (calculated)

-0.336

Length

168 amino acids

Sequence
(BLAST)

001: MLVYQDLLTG DELLSDSFPY KELENGMLWE VQGKWVVQGA VDVNIGANPS AEGGGEDEGV DDQAVKVVDI VDTFRLQEQP AFDKKQFVTY MKRYIKNLTP
101: KLEGETQEAF KKNIESATKF LLQKIKDLQF FVGESMHDDS ALVFAYYKDG SADPTFLYLA PGLKEIKC

Best Arabidopsis Sequence Match ( AT3G16640.1 )
(BLAST)

001: MLVYQDLLTG DELLSDSFPY KEIENGILWE VEGKWVTVGA VDVNIGANPS AEEGGEDEGV DDSTQKVVDI VDTFRLQEQP TYDKKGFIAY IKKYIKLLTP
101: KLSEEDQAVF KKGIEGATKF LLPRLSDFQF FVGEGMHDDS TLVFAYYKEG STNPTFLYFA HGLKEVKC

Arabidopsis Description

TCTP1Translationally-controlled tumor protein 1 [Source:UniProtKB/Swiss-Prot;Acc:P31265]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.