Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d014957_P001 | Maize | plastid | 92.22 | 99.4 |
| OQU84170 | Sorghum | cytosol | 77.22 | 83.23 |
| VIT_05s0020g01170.t01 | Wine grape | cytosol | 75.56 | 81.44 |
| HORVU4Hr1G033200.1 | Barley | cytosol | 75.56 | 80.95 |
| VIT_14s0060g02270.t01 | Wine grape | cytosol | 75.0 | 80.36 |
| GSMUA_Achr9P20280_001 | Banana | cytosol | 74.44 | 80.24 |
| KRH33890 | Soybean | cytosol, nucleus | 73.89 | 79.17 |
| Os11t0660500-01 | Rice | extracellular | 73.89 | 79.17 |
| TraesCS4B01G144200.1 | Wheat | cytosol, golgi, plastid, unclear | 73.89 | 79.17 |
| GSMUA_Achr1P14760_001 | Banana | cytosol | 73.33 | 79.04 |
| TraesCS4A01G169100.1 | Wheat | cytosol | 73.33 | 78.57 |
| TraesCS4D01G145400.1 | Wheat | cytosol | 56.67 | 78.46 |
| GSMUA_Achr3P00730_001 | Banana | cytosol | 72.78 | 78.44 |
| GSMUA_Achr7P03740_001 | Banana | cytosol | 72.22 | 77.84 |
| Solyc01g099780.2.1 | Tomato | cytosol, nucleus, unclear | 72.22 | 77.38 |
| Bra022172.1-P | Field mustard | cytosol | 71.67 | 76.79 |
| CDY43119 | Canola | cytosol | 71.67 | 76.79 |
| CDY28353 | Canola | cytosol | 71.67 | 76.79 |
| CDX92089 | Canola | cytosol | 71.67 | 76.79 |
| CDX75889 | Canola | cytosol | 71.67 | 76.79 |
| KRH12062 | Soybean | cytosol, nucleus | 71.11 | 76.65 |
| Bra021187.1-P | Field mustard | cytosol | 71.11 | 76.19 |
| Bra001637.1-P | Field mustard | cytosol | 71.11 | 76.19 |
| CDX82396 | Canola | cytosol | 71.11 | 76.19 |
| KRH37101 | Soybean | cytosol, endoplasmic reticulum, nucleus | 71.11 | 76.19 |
| CDY34963 | Canola | cytosol | 71.11 | 76.19 |
| AT3G16640.1 | Thale cress | cytosol | 70.56 | 75.6 |
| Solyc01g099770.2.1 | Tomato | plastid | 70.0 | 75.0 |
| AT3G05540.1 | Thale cress | cytosol | 67.22 | 72.02 |
| KXG28492 | Sorghum | cytosol | 53.33 | 71.11 |
| TraesCS6B01G002800.1 | Wheat | cytosol | 65.0 | 68.02 |
| PGSC0003DMT400063575 | Potato | cytosol | 67.22 | 67.22 |
| GSMUA_Achr11P... | Banana | cytosol | 57.22 | 64.78 |
| Bra040541.1-P | Field mustard | cytosol | 32.22 | 64.44 |
| CDY18821 | Canola | cytosol | 32.22 | 64.44 |
| GSMUA_Achr5P00170_001 | Banana | cytosol | 51.67 | 62.0 |
| KRG92901 | Soybean | cytosol | 45.56 | 49.1 |
Protein Annotations
| EnsemblPlants:Zm00001d014954_P002 | EnsemblPlants:Zm00001d014954_T002 | EnsemblPlantsGene:Zm00001d014954 | Gene3D:2.170.150.10 | InterPro:IPR011323 | InterPro:IPR034737 |
| InterPro:Mss4-like_sf | InterPro:Mss4/transl-control_tumour | InterPro:TCTP | InterPro:Translation_control_tumour_CS | InterPro:Translational_control_tumour_p | PANTHER:PTHR11991 |
| PANTHER:PTHR11991:SF0 | PFAM:PF00838 | PFscan:PS51797 | ProteinID:AQK67710.1 | ScanProsite:PS01002 | ScanProsite:PS01003 |
| SEG:seg | SUPFAM:SSF51316 | UniParc:UPI000842C8AA | UniProt:A0A1D6GY43 | MapMan:35.1 | : |
Description
translationally controlled tumor1 translationally controlled tumor1
Coordinates
chr5:-:69765432..69768123
Molecular Weight (calculated)
20227.9 Da
IEP (calculated)
4.323
GRAVY (calculated)
-0.285
Length
180 amino acids
Sequence
(BLAST)
(BLAST)
001: MLVYQDLLSG DELLSDSFTY KELENGVLWE VEGKARTSML VHECNLEWVT QGPVDVDIGA NPSAEGGEDE SVDDTAVKVV DIVDTFRLQE QPPFDKKSFV
101: SYIKKYIKNL TAVLEPEKAD EFKKGVEGAT KFLLSKLKDL QFFVGESMKD EASVVFAYYK DGATNPTFLY FSHGLKEIKC
101: SYIKKYIKNL TAVLEPEKAD EFKKGVEGAT KFLLSKLKDL QFFVGESMKD EASVVFAYYK DGATNPTFLY FSHGLKEIKC
001: MLVYQDILTG DELLSDSFPY KEIENGMLWE VEGKWVVKGA MDFDIGANPG EEGGEDEGVD DQAVKVVDII DTFRLQEQPS FDKKQFVMFM KRYIKQLSPK
101: LDSENQELFK KHIESATKFL MSKLKDFQFF VGESMEGEEG SLVFAYYREG ATDPTFLYLA YGLKEIKC
101: LDSENQELFK KHIESATKFL MSKLKDFQFF VGESMEGEEG SLVFAYYREG ATDPTFLYLA YGLKEIKC
Arabidopsis Description
Methionine sulfoxide reductase (MSS4-like) family protein [Source:TAIR;Acc:AT3G05540]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.