CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	secretory
EpiLoc:	endoplasmic reticulum
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY03088
CDY17621
CDY42827
CDY51514
CDY55390
CDY61202

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G16640.1	CDY03088	AT2G01950.1	19000166
AT3G16640.1	CDY17621	AT2G01950.1	19000166
AT3G16640.1	CDY42827	AT2G42580.1	19000166
AT3G16640.1	CDY51514	AT2G42580.1	19000166
AT3G16640.1	CDY55390	AT2G42580.1	19000166
AT3G16640.1	CDY61202	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001637.1-P	Field mustard	cytosol	100.0	100.0
CDY34963	Canola	cytosol	99.4	99.4
CDX75889	Canola	cytosol	98.81	98.81
CDY28353	Canola	cytosol	94.05	94.05
CDX92089	Canola	cytosol	90.48	90.48
CDY43119	Canola	cytosol	90.48	90.48
AT3G16640.1	Thale cress	cytosol	89.88	89.88
OQU84170	Sorghum	cytosol	77.98	78.44
Zm00001d014957_P001	Maize	plastid	76.79	77.25
Os11t0660500-01	Rice	extracellular	76.79	76.79
HORVU4Hr1G033200.1	Barley	cytosol	75.0	75.0
TraesCS4B01G144200.1	Wheat	cytosol, golgi, plastid, unclear	72.62	72.62
TraesCS4A01G169100.1	Wheat	cytosol	72.02	72.02
Zm00001d014954_P002	Maize	cytosol	76.19	71.11
TraesCS4D01G145400.1	Wheat	cytosol	52.38	67.69
KXG28492	Sorghum	cytosol	52.38	65.19
TraesCS6B01G002800.1	Wheat	cytosol	63.69	62.21
CDY18821	Canola	cytosol	32.74	61.11

Protein Annotations

EnsemblPlants:CDX82396	EnsemblPlantsGene:GSBRNA2T00137518001	Gene3D:2.170.150.10	InterPro:IPR011323	InterPro:IPR034737	InterPro:Mss4-like_sf
InterPro:Mss4/transl-control_tumour	InterPro:TCTP	InterPro:Translation_control_tumour_CS	InterPro:Translational_control_tumour_p	PANTHER:PTHR11991	PANTHER:PTHR11991:SF0
PFAM:PF00838	PFscan:PS51797	PRINTS:PR01653	ProteinID:CDX82396	ProteinID:CDX82396.1	ScanProsite:PS01002
ScanProsite:PS01003	SEG:seg	SUPFAM:SSF51316	UniParc:UPI0001BA86AA	MapMan:35.1	:

Description

BnaA03g34250D

Coordinates

chrLK031828:+:975928..977334

Molecular Weight (calculated)

19056.6 Da

IEP (calculated)

4.358

GRAVY (calculated)

-0.398

Length

168 amino acids

Sequence
(BLAST)

001: MLVYTDLLTG DELLSDSFPY KEIENGILWE VEGKWTTKGC VEVNIGANPS AEEGGEDEGV DDSVEKVVDI VDTFRLQEQP TYDKKGFIAY IKKYIKLLTP
101: KLTPEQQEEF KKGIEGATKY LLPKLKDFQF FVGEGMHDDS TIVFAYYKEG ATNPTFLYFA HGLKEVKC

Best Arabidopsis Sequence Match ( AT3G16640.1 )
(BLAST)

001: MLVYQDLLTG DELLSDSFPY KEIENGILWE VEGKWVTVGA VDVNIGANPS AEEGGEDEGV DDSTQKVVDI VDTFRLQEQP TYDKKGFIAY IKKYIKLLTP
101: KLSEEDQAVF KKGIEGATKF LLPRLSDFQF FVGEGMHDDS TLVFAYYKEG STNPTFLYFA HGLKEVKC

Arabidopsis Description

TCTP1Translationally-controlled tumor protein 1 [Source:UniProtKB/Swiss-Prot;Acc:P31265]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.