Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 2
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra000267.1-P | |
| Bra004709.1-P | |
| Bra024839.1-P | |
| Bra024840.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G16640.1 | Bra024839.1-P | AT2G01950.1 | 19000166 |
| AT3G16640.1 | Bra024840.1-P | AT2G01950.1 | 19000166 |
| AT3G16640.1 | Bra000267.1-P | AT2G42580.1 | 19000166 |
| AT3G16640.1 | Bra004709.1-P | AT2G42580.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX82396 | Canola | cytosol | 100.0 | 100.0 |
| Bra021187.1-P | Field mustard | cytosol | 99.4 | 99.4 |
| CDX75889 | Canola | cytosol | 98.81 | 98.81 |
| Bra022172.1-P | Field mustard | cytosol | 90.48 | 90.48 |
| AT3G16640.1 | Thale cress | cytosol | 89.88 | 89.88 |
| OQU84170 | Sorghum | cytosol | 77.98 | 78.44 |
| Zm00001d014957_P001 | Maize | plastid | 76.79 | 77.25 |
| Os11t0660500-01 | Rice | extracellular | 76.79 | 76.79 |
| HORVU4Hr1G033200.1 | Barley | cytosol | 75.0 | 75.0 |
| TraesCS4B01G144200.1 | Wheat | cytosol, golgi, plastid, unclear | 72.62 | 72.62 |
| TraesCS4A01G169100.1 | Wheat | cytosol | 72.02 | 72.02 |
| Zm00001d014954_P002 | Maize | cytosol | 76.19 | 71.11 |
| TraesCS4D01G145400.1 | Wheat | cytosol | 52.38 | 67.69 |
| KXG28492 | Sorghum | cytosol | 52.38 | 65.19 |
| TraesCS6B01G002800.1 | Wheat | cytosol | 63.69 | 62.21 |
| Bra040541.1-P | Field mustard | cytosol | 32.74 | 61.11 |
Protein Annotations
| EnsemblPlants:Bra001637.1 | EnsemblPlants:Bra001637.1-P | EnsemblPlantsGene:Bra001637 | Gene3D:2.170.150.10 | InterPro:IPR011323 | InterPro:IPR034737 |
| InterPro:Mss4-like_sf | InterPro:Mss4/transl-control_tumour | InterPro:TCTP | InterPro:Translation_control_tumour_CS | InterPro:Translational_control_tumour_p | PANTHER:PTHR11991 |
| PANTHER:PTHR11991:SF0 | PFAM:PF00838 | PFscan:PS51797 | PRINTS:PR01653 | ScanProsite:PS01002 | ScanProsite:PS01003 |
| SEG:seg | SUPFAM:SSF51316 | UniParc:UPI0001BA86AA | UniProt:M4CBQ7 | MapMan:35.1 | : |
Description
AT3G16640 (E=4e-075) TCTP | TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)
Coordinates
chrA03:-:17623064..17624110
Molecular Weight (calculated)
19056.6 Da
IEP (calculated)
4.358
GRAVY (calculated)
-0.398
Length
168 amino acids
Sequence
(BLAST)
(BLAST)
001: MLVYTDLLTG DELLSDSFPY KEIENGILWE VEGKWTTKGC VEVNIGANPS AEEGGEDEGV DDSVEKVVDI VDTFRLQEQP TYDKKGFIAY IKKYIKLLTP
101: KLTPEQQEEF KKGIEGATKY LLPKLKDFQF FVGEGMHDDS TIVFAYYKEG ATNPTFLYFA HGLKEVKC
101: KLTPEQQEEF KKGIEGATKY LLPKLKDFQF FVGEGMHDDS TIVFAYYKEG ATNPTFLYFA HGLKEVKC
001: MLVYQDLLTG DELLSDSFPY KEIENGILWE VEGKWVTVGA VDVNIGANPS AEEGGEDEGV DDSTQKVVDI VDTFRLQEQP TYDKKGFIAY IKKYIKLLTP
101: KLSEEDQAVF KKGIEGATKF LLPRLSDFQF FVGEGMHDDS TLVFAYYKEG STNPTFLYFA HGLKEVKC
101: KLSEEDQAVF KKGIEGATKF LLPRLSDFQF FVGEGMHDDS TLVFAYYKEG STNPTFLYFA HGLKEVKC
Arabidopsis Description
TCTP1Translationally-controlled tumor protein 1 [Source:UniProtKB/Swiss-Prot;Acc:P31265]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.