Factsheet for TraesCS4B01G144200.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear, plastid, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, plastid, unclear
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 22160430
golgi: 23128297
unclear: 25769308

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G427400.1
TraesCS1B01G462300.1
TraesCS1D01G437100.1
TraesCS3A01G099400.1
TraesCS3A01G143000.1
TraesCS3A01G221800.1
TraesCS3B01G115800.1
TraesCS3B01G162100.1
TraesCS3B01G251600.1
TraesCS3D01G099700.1
TraesCS3D01G144600.1
TraesCS3D01G231300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G16640.1	TraesCS3A01G099400.1	AT2G01950.1	19000166
AT3G16640.1	TraesCS3B01G115800.1	AT2G01950.1	19000166
AT3G16640.1	TraesCS3D01G099700.1	AT2G01950.1	19000166
AT3G16640.1	TraesCS1A01G427400.1	AT2G42580.1	19000166
AT3G16640.1	TraesCS1B01G462300.1	AT2G42580.1	19000166
AT3G16640.1	TraesCS1D01G437100.1	AT2G42580.1	19000166
AT3G16640.1	TraesCS3A01G143000.1	AT2G42580.1	19000166
AT3G16640.1	TraesCS3A01G221800.1	AT2G42580.1	19000166
AT3G16640.1	TraesCS3B01G162100.1	AT2G42580.1	19000166
AT3G16640.1	TraesCS3B01G251600.1	AT2G42580.1	19000166
AT3G16640.1	TraesCS3D01G144600.1	AT2G42580.1	19000166
AT3G16640.1	TraesCS3D01G231300.1	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G169100.1	Wheat	cytosol	98.81	98.81
TraesCS4D01G145400.1	Wheat	cytosol	76.19	98.46
HORVU4Hr1G033200.1	Barley	cytosol	94.64	94.64
Os11t0660500-01	Rice	extracellular	85.12	85.12
KRH33890	Soybean	cytosol, nucleus	82.74	82.74
Solyc01g099780.2.1	Tomato	cytosol, nucleus, unclear	82.74	82.74
Solyc01g099770.2.1	Tomato	plastid	82.14	82.14
VIT_14s0060g02270.t01	Wine grape	cytosol	81.55	81.55
Zm00001d014957_P001	Maize	plastid	79.76	80.24
OQU84170	Sorghum	cytosol	79.76	80.24
VIT_05s0020g01170.t01	Wine grape	cytosol	79.76	80.24
KRH37101	Soybean	cytosol, endoplasmic reticulum, nucleus	79.17	79.17
KRH12062	Soybean	cytosol, nucleus	78.57	79.04
GSMUA_Achr1P14760_001	Banana	cytosol	78.57	79.04
GSMUA_Achr3P00730_001	Banana	cytosol	78.57	79.04
GSMUA_Achr7P03740_001	Banana	cytosol	77.98	78.44
GSMUA_Achr9P20280_001	Banana	cytosol	77.38	77.84
TraesCS6B01G002800.1	Wheat	cytosol	77.38	75.58
Zm00001d014954_P002	Maize	cytosol	79.17	73.89
AT3G05540.1	Thale cress	cytosol	73.81	73.81
AT3G16640.1	Thale cress	cytosol	73.81	73.81
CDY28353	Canola	cytosol	73.81	73.81
CDY43119	Canola	cytosol	73.21	73.21
CDX92089	Canola	cytosol	73.21	73.21
Bra022172.1-P	Field mustard	cytosol	73.21	73.21
CDX82396	Canola	cytosol	72.62	72.62
Bra001637.1-P	Field mustard	cytosol	72.62	72.62
CDY34963	Canola	cytosol	72.02	72.02
Bra021187.1-P	Field mustard	cytosol	72.02	72.02
PGSC0003DMT400063575	Potato	cytosol	76.79	71.67
CDX75889	Canola	cytosol	71.43	71.43
KXG28492	Sorghum	cytosol	55.36	68.89
GSMUA_Achr11P...	Banana	cytosol	63.1	66.67
CDY18821	Canola	cytosol	35.12	65.56
Bra040541.1-P	Field mustard	cytosol	35.12	65.56
GSMUA_Achr5P00170_001	Banana	cytosol	57.74	64.67
KRG92901	Soybean	cytosol	52.38	52.69

Protein Annotations

EnsemblPlants:TraesCS4B01G144200.1	EnsemblPlantsGene:TraesCS4B01G144200	Gene3D:2.170.150.10	InterPro:IPR011323	InterPro:IPR034737	InterPro:Mss4-like_sf
InterPro:Mss4/transl-control_tumour	InterPro:TCTP	InterPro:Translation_control_tumour_CS	InterPro:Translational_control_tumour_p	PANTHER:PTHR11991	PANTHER:PTHR11991:SF0
PFAM:PF00838	PFscan:PS51797	PRINTS:PR01653	ScanProsite:PS01002	ScanProsite:PS01003	SEG:seg
SUPFAM:SSF51316	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr4B:+:193523940..193525880

Molecular Weight (calculated)

18821.1 Da

IEP (calculated)

4.330

GRAVY (calculated)

-0.342

Length

168 amino acids

Sequence
(BLAST)

001: MLVYQDKLSG DELLSDSFPY RELENGVLWE VDGHWVVQGA VDVDIGANPS AEGGGDDEGV DDQAVKVVDI VDTFRLQEQP AFDKKQFISH MKRYIKNLTA
101: KLEGDDLDVF KKNVESATKY LLSKLKDLQF FVGESMHDDG GVVFAYYKEG AADPTFLYFA HGLKEVKC

Best Arabidopsis Sequence Match ( AT3G16640.1 )
(BLAST)

001: MLVYQDLLTG DELLSDSFPY KEIENGILWE VEGKWVTVGA VDVNIGANPS AEEGGEDEGV DDSTQKVVDI VDTFRLQEQP TYDKKGFIAY IKKYIKLLTP
101: KLSEEDQAVF KKGIEGATKF LLPRLSDFQF FVGEGMHDDS TLVFAYYKEG STNPTFLYFA HGLKEVKC

Arabidopsis Description

TCTP1Translationally-controlled tumor protein 1 [Source:UniProtKB/Swiss-Prot;Acc:P31265]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.