Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 2
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra000267.1-P | |
| Bra004709.1-P | |
| Bra024839.1-P | |
| Bra024840.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G16640.1 | Bra024839.1-P | AT2G01950.1 | 19000166 |
| AT3G16640.1 | Bra024840.1-P | AT2G01950.1 | 19000166 |
| AT3G16640.1 | Bra000267.1-P | AT2G42580.1 | 19000166 |
| AT3G16640.1 | Bra004709.1-P | AT2G42580.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX92089 | Canola | cytosol | 100.0 | 100.0 |
| CDY43119 | Canola | cytosol | 100.0 | 100.0 |
| AT3G16640.1 | Thale cress | cytosol | 95.24 | 95.24 |
| Bra021187.1-P | Field mustard | cytosol | 91.07 | 91.07 |
| Bra001637.1-P | Field mustard | cytosol | 90.48 | 90.48 |
| OQU84170 | Sorghum | cytosol | 77.98 | 78.44 |
| Zm00001d014957_P001 | Maize | plastid | 77.38 | 77.84 |
| Os11t0660500-01 | Rice | extracellular | 76.79 | 76.79 |
| HORVU4Hr1G033200.1 | Barley | cytosol | 75.6 | 75.6 |
| TraesCS4A01G169100.1 | Wheat | cytosol | 73.21 | 73.21 |
| TraesCS4B01G144200.1 | Wheat | cytosol, golgi, plastid, unclear | 73.21 | 73.21 |
| Zm00001d014954_P002 | Maize | cytosol | 76.79 | 71.67 |
| TraesCS4D01G145400.1 | Wheat | cytosol | 53.57 | 69.23 |
| KXG28492 | Sorghum | cytosol | 52.38 | 65.19 |
| TraesCS6B01G002800.1 | Wheat | cytosol | 65.48 | 63.95 |
| Bra040541.1-P | Field mustard | cytosol | 32.74 | 61.11 |
Protein Annotations
| EnsemblPlants:Bra022172.1 | EnsemblPlants:Bra022172.1-P | EnsemblPlantsGene:Bra022172 | Gene3D:2.170.150.10 | InterPro:IPR011323 | InterPro:IPR034737 |
| InterPro:Mss4-like_sf | InterPro:Mss4/transl-control_tumour | InterPro:TCTP | InterPro:Translation_control_tumour_CS | InterPro:Translational_control_tumour_p | PANTHER:PTHR11991 |
| PANTHER:PTHR11991:SF0 | PFAM:PF00838 | PFscan:PS51797 | PRINTS:PR01653 | ScanProsite:PS01002 | ScanProsite:PS01003 |
| SEG:seg | SUPFAM:SSF51316 | UniParc:UPI0002547731 | UniProt:M4E075 | MapMan:35.1 | : |
Description
AT3G16640 (E=7e-084) TCTP | TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)
Coordinates
chrA05:+:19314043..19315100
Molecular Weight (calculated)
18895.3 Da
IEP (calculated)
4.258
GRAVY (calculated)
-0.355
Length
168 amino acids
Sequence
(BLAST)
(BLAST)
001: MLVYQDLLTG DELLSDSFPY KEIENGILWE VEGKWTTVGA VDVNIGANPS AEEGGEDEGV DDTTQKVVDI VDTFRLQEQP TYDKKGFIAY IKKYIKLLTP
101: KLNEEDQAAF KKGIEGATKF LLPKLNDFQF FVGEGMHDDS TLVFAYYKEG ATNPTFLYFG HGLKEVKC
101: KLNEEDQAAF KKGIEGATKF LLPKLNDFQF FVGEGMHDDS TLVFAYYKEG ATNPTFLYFG HGLKEVKC
001: MLVYQDLLTG DELLSDSFPY KEIENGILWE VEGKWVTVGA VDVNIGANPS AEEGGEDEGV DDSTQKVVDI VDTFRLQEQP TYDKKGFIAY IKKYIKLLTP
101: KLSEEDQAVF KKGIEGATKF LLPRLSDFQF FVGEGMHDDS TLVFAYYKEG STNPTFLYFA HGLKEVKC
101: KLSEEDQAVF KKGIEGATKF LLPRLSDFQF FVGEGMHDDS TLVFAYYKEG STNPTFLYFA HGLKEVKC
Arabidopsis Description
TCTP1Translationally-controlled tumor protein 1 [Source:UniProtKB/Swiss-Prot;Acc:P31265]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.