Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- extracellular 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G144200.1 | Wheat | cytosol, golgi, plastid, unclear | 98.46 | 76.19 |
| TraesCS4A01G169100.1 | Wheat | cytosol | 98.46 | 76.19 |
| HORVU4Hr1G033200.1 | Barley | cytosol | 93.08 | 72.02 |
| KXG28492 | Sorghum | cytosol | 69.23 | 66.67 |
| Bra040541.1-P | Field mustard | cytosol | 46.15 | 66.67 |
| CDY18821 | Canola | cytosol | 46.15 | 66.67 |
| Os11t0660500-01 | Rice | extracellular | 83.85 | 64.88 |
| Solyc01g099780.2.1 | Tomato | cytosol, nucleus, unclear | 82.31 | 63.69 |
| KRH33890 | Soybean | cytosol, nucleus | 80.77 | 62.5 |
| Solyc01g099770.2.1 | Tomato | plastid | 80.0 | 61.9 |
| Zm00001d014957_P001 | Maize | plastid | 78.46 | 61.08 |
| VIT_14s0060g02270.t01 | Wine grape | cytosol | 77.69 | 60.12 |
| VIT_05s0020g01170.t01 | Wine grape | cytosol | 76.92 | 59.88 |
| KRH37101 | Soybean | cytosol, endoplasmic reticulum, nucleus | 76.92 | 59.52 |
| KRH12062 | Soybean | cytosol, nucleus | 76.15 | 59.28 |
| OQU84170 | Sorghum | cytosol | 75.38 | 58.68 |
| GSMUA_Achr9P20280_001 | Banana | cytosol | 74.62 | 58.08 |
| GSMUA_Achr7P03740_001 | Banana | cytosol | 74.62 | 58.08 |
| GSMUA_Achr3P00730_001 | Banana | cytosol | 74.62 | 58.08 |
| GSMUA_Achr1P14760_001 | Banana | cytosol | 73.85 | 57.48 |
| AT3G05540.1 | Thale cress | cytosol | 73.85 | 57.14 |
| Zm00001d014954_P002 | Maize | cytosol | 78.46 | 56.67 |
| PGSC0003DMT400063575 | Potato | cytosol | 75.38 | 54.44 |
| AT3G16640.1 | Thale cress | cytosol | 70.0 | 54.17 |
| CDY43119 | Canola | cytosol | 69.23 | 53.57 |
| CDY28353 | Canola | cytosol | 69.23 | 53.57 |
| CDX92089 | Canola | cytosol | 69.23 | 53.57 |
| Bra022172.1-P | Field mustard | cytosol | 69.23 | 53.57 |
| CDY34963 | Canola | cytosol | 67.69 | 52.38 |
| CDX82396 | Canola | cytosol | 67.69 | 52.38 |
| Bra021187.1-P | Field mustard | cytosol | 67.69 | 52.38 |
| Bra001637.1-P | Field mustard | cytosol | 67.69 | 52.38 |
| CDX75889 | Canola | cytosol | 66.15 | 51.19 |
| KRG92901 | Soybean | cytosol | 61.54 | 47.9 |
| GSMUA_Achr11P... | Banana | cytosol | 58.46 | 47.8 |
| GSMUA_Achr5P00170_001 | Banana | cytosol | 53.08 | 46.0 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G145400.1 | EnsemblPlantsGene:TraesCS4D01G145400 | Gene3D:2.170.150.10 | InterPro:IPR011323 | InterPro:IPR034737 | InterPro:Mss4-like_sf |
| InterPro:Mss4/transl-control_tumour | InterPro:TCTP | InterPro:Translation_control_tumour_CS | InterPro:Translational_control_tumour_p | PANTHER:PTHR11991 | PANTHER:PTHR11991:SF0 |
| PFAM:PF00838 | PFscan:PS51797 | PRINTS:PR01653 | ScanProsite:PS01002 | SEG:seg | SUPFAM:SSF51316 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr4D:+:134547507..134548866
Molecular Weight (calculated)
14591.1 Da
IEP (calculated)
4.261
GRAVY (calculated)
-0.428
Length
130 amino acids
Sequence
(BLAST)
(BLAST)
001: MLVYQDKLSG DELLSDSFPY RELENGVLWE VDGHWVVQGA VDVDIGANPS AEGGGDDEGV DDQAVKVVDI VDTFRLQEQP AFDKKQFISH MKRYIKNLSA
101: KLEGDDLDVF KKNVESATKY LLSKLKDLQL
101: KLEGDDLDVF KKNVESATKY LLSKLKDLQL
001: MLVYQDILTG DELLSDSFPY KEIENGMLWE VEGKWVVKGA MDFDIGANPG EEGGEDEGVD DQAVKVVDII DTFRLQEQPS FDKKQFVMFM KRYIKQLSPK
101: LDSENQELFK KHIESATKFL MSKLKDFQFF VGESMEGEEG SLVFAYYREG ATDPTFLYLA YGLKEIKC
101: LDSENQELFK KHIESATKFL MSKLKDFQFF VGESMEGEEG SLVFAYYREG ATDPTFLYLA YGLKEIKC
Arabidopsis Description
Methionine sulfoxide reductase (MSS4-like) family protein [Source:TAIR;Acc:AT3G05540]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.