Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 3
- vacuole 2
- plasma membrane 2
- golgi 2
- cytosol 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P14760_001 | Banana | cytosol | 95.81 | 95.81 |
| GSMUA_Achr7P03740_001 | Banana | cytosol | 92.22 | 92.22 |
| GSMUA_Achr9P20280_001 | Banana | cytosol | 92.22 | 92.22 |
| VIT_14s0060g02270.t01 | Wine grape | cytosol | 89.22 | 88.69 |
| KRH12062 | Soybean | cytosol, nucleus | 88.02 | 88.02 |
| KRH37101 | Soybean | cytosol, endoplasmic reticulum, nucleus | 88.02 | 87.5 |
| KRH33890 | Soybean | cytosol, nucleus | 87.43 | 86.9 |
| Os11t0660500-01 | Rice | extracellular | 86.23 | 85.71 |
| AT3G05540.1 | Thale cress | cytosol | 82.63 | 82.14 |
| OQU84170 | Sorghum | cytosol | 82.04 | 82.04 |
| HORVU4Hr1G033200.1 | Barley | cytosol | 80.24 | 79.76 |
| Zm00001d014957_P001 | Maize | plastid | 79.04 | 79.04 |
| TraesCS4B01G144200.1 | Wheat | cytosol, golgi, plastid, unclear | 79.04 | 78.57 |
| TraesCS4A01G169100.1 | Wheat | cytosol | 78.44 | 77.98 |
| GSMUA_Achr11P... | Banana | cytosol | 73.65 | 77.36 |
| TraesCS4D01G145400.1 | Wheat | cytosol | 58.08 | 74.62 |
| Zm00001d014954_P002 | Maize | cytosol | 78.44 | 72.78 |
| GSMUA_Achr5P00170_001 | Banana | cytosol | 65.27 | 72.67 |
| CDY18821 | Canola | cytosol | 38.92 | 72.22 |
| Bra040541.1-P | Field mustard | cytosol | 38.92 | 72.22 |
| TraesCS6B01G002800.1 | Wheat | cytosol | 73.05 | 70.93 |
| KXG28492 | Sorghum | cytosol | 56.29 | 69.63 |
| KRG92901 | Soybean | cytosol | 55.69 | 55.69 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P00730_001 | EnsemblPlants:GSMUA_Achr3T00730_001 | EnsemblPlantsGene:GSMUA_Achr3G00730_001 | Gene3D:2.170.150.10 | InterPro:IPR011323 | InterPro:IPR034737 |
| InterPro:Mss4-like_sf | InterPro:Mss4/transl-control_tumour | InterPro:TCTP | InterPro:Translation_control_tumour_CS | InterPro:Translational_control_tumour_p | PANTHER:PTHR11991 |
| PANTHER:PTHR11991:SF0 | PFAM:PF00838 | PFscan:PS51797 | PRINTS:PR01653 | ScanProsite:PS01002 | ScanProsite:PS01003 |
| SUPFAM:SSF51316 | UniParc:UPI00029481D4 | UniProt:M0SAP1 | MapMan:35.1 | : | : |
Description
Translationally-controlled tumor protein homolog [Source:GMGC_GENE;Acc:GSMUA_Achr3G00730_001]
Coordinates
chr3:+:548084..554439
Molecular Weight (calculated)
19026.7 Da
IEP (calculated)
4.461
GRAVY (calculated)
-0.286
Length
167 amino acids
Sequence
(BLAST)
(BLAST)
001: MLVYQDLLTA DELLSDSFHC KEIENGMLWE VQGKWVVKGA IDVDIGANPS AEGGEDEGVD DSAVKVVDIV DTFRLQEQPA FDKKQFVTYM KRYIKLLTPK
101: LDEEKQELFK KHIEGATKFL LSKLKDLQFF VGESMHDDGS MVFAYYKDGA TDPTFLYFAY GLKEVKC
101: LDEEKQELFK KHIEGATKFL LSKLKDLQFF VGESMHDDGS MVFAYYKDGA TDPTFLYFAY GLKEVKC
001: MLVYQDILTG DELLSDSFPY KEIENGMLWE VEGKWVVKGA MDFDIGANPG EEGGEDEGVD DQAVKVVDII DTFRLQEQPS FDKKQFVMFM KRYIKQLSPK
101: LDSENQELFK KHIESATKFL MSKLKDFQFF VGESMEGEEG SLVFAYYREG ATDPTFLYLA YGLKEIKC
101: LDSENQELFK KHIESATKFL MSKLKDFQFF VGESMEGEEG SLVFAYYREG ATDPTFLYLA YGLKEIKC
Arabidopsis Description
Methionine sulfoxide reductase (MSS4-like) family protein [Source:TAIR;Acc:AT3G05540]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.