Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 1
- golgi 1
- extracellular 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_14s0060g02270.t01 | Wine grape | cytosol | 84.52 | 84.52 |
| GSMUA_Achr1P14760_001 | Banana | cytosol | 82.14 | 82.63 |
| GSMUA_Achr3P00730_001 | Banana | cytosol | 82.14 | 82.63 |
| GSMUA_Achr9P20280_001 | Banana | cytosol | 81.55 | 82.04 |
| GSMUA_Achr7P03740_001 | Banana | cytosol | 79.76 | 80.24 |
| Bra040541.1-P | Field mustard | cytosol | 42.86 | 80.0 |
| CDY18821 | Canola | cytosol | 42.86 | 80.0 |
| Os11t0660500-01 | Rice | extracellular | 79.17 | 79.17 |
| OQU84170 | Sorghum | cytosol | 76.19 | 76.65 |
| HORVU4Hr1G033200.1 | Barley | cytosol | 75.6 | 75.6 |
| TraesCS4A01G169100.1 | Wheat | cytosol | 74.4 | 74.4 |
| TraesCS4D01G145400.1 | Wheat | cytosol | 57.14 | 73.85 |
| TraesCS4B01G144200.1 | Wheat | cytosol, golgi, plastid, unclear | 73.81 | 73.81 |
| AT3G16640.1 | Thale cress | cytosol | 72.02 | 72.02 |
| Zm00001d014957_P001 | Maize | plastid | 71.43 | 71.86 |
| GSMUA_Achr11P... | Banana | cytosol | 66.07 | 69.81 |
| TraesCS6B01G002800.1 | Wheat | cytosol | 70.24 | 68.6 |
| Zm00001d014954_P002 | Maize | cytosol | 72.02 | 67.22 |
| KXG28492 | Sorghum | cytosol | 50.6 | 62.96 |
| GSMUA_Achr5P00170_001 | Banana | cytosol | 55.36 | 62.0 |
| KRG92901 | Soybean | cytosol | 50.6 | 50.9 |
Protein Annotations
| Gene3D:2.170.150.10 | MapMan:35.1 | ArrayExpress:AT3G05540 | EnsemblPlantsGene:AT3G05540 | RefSeq:AT3G05540 | TAIR:AT3G05540 |
| RefSeq:AT3G05540-TAIR-G | EnsemblPlants:AT3G05540.1 | TAIR:AT3G05540.1 | Unigene:At.53191 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0032502 |
| GO:GO:0042127 | InterPro:IPR011323 | InterPro:IPR034737 | InterPro:Mss4-like_sf | InterPro:Mss4/transl-control_tumour | PFAM:PF00838 |
| PRINTS:PR01653 | ScanProsite:PS01003 | PFscan:PS51797 | PANTHER:PTHR11991 | PANTHER:PTHR11991:SF0 | SUPFAM:SSF51316 |
| InterPro:TCTP | InterPro:Translation_control_tumour_CS | InterPro:Translational_control_tumour_p | UniParc:UPI0001A7B05D | SEG:seg | : |
Description
Methionine sulfoxide reductase (MSS4-like) family protein [Source:TAIR;Acc:AT3G05540]
Coordinates
chr3:-:1606487..1608030
Molecular Weight (calculated)
19321.0 Da
IEP (calculated)
4.215
GRAVY (calculated)
-0.383
Length
168 amino acids
Sequence
(BLAST)
(BLAST)
001: MLVYQDILTG DELLSDSFPY KEIENGMLWE VEGKWVVKGA MDFDIGANPG EEGGEDEGVD DQAVKVVDII DTFRLQEQPS FDKKQFVMFM KRYIKQLSPK
101: LDSENQELFK KHIESATKFL MSKLKDFQFF VGESMEGEEG SLVFAYYREG ATDPTFLYLA YGLKEIKC
101: LDSENQELFK KHIESATKFL MSKLKDFQFF VGESMEGEEG SLVFAYYREG ATDPTFLYLA YGLKEIKC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.