Factsheet for Bra040541.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
endoplasmic reticulum 1
cytosol 3
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18821	Canola	cytosol	100.0	100.0
TraesCS4D01G145400.1	Wheat	cytosol	66.67	46.15
AT3G05540.1	Thale cress	cytosol	80.0	42.86
KXG28492	Sorghum	cytosol	63.33	42.22
GSMUA_Achr5P00170_001	Banana	cytosol	67.78	40.67
GSMUA_Achr3P00730_001	Banana	cytosol	72.22	38.92
VIT_14s0060g02270.t01	Wine grape	cytosol	72.22	38.69
GSMUA_Achr1P14760_001	Banana	cytosol	71.11	38.32
GSMUA_Achr7P03740_001	Banana	cytosol	71.11	38.32
KRG92901	Soybean	cytosol	70.0	37.72
Os11t0660500-01	Rice	extracellular	70.0	37.5
GSMUA_Achr9P20280_001	Banana	cytosol	68.89	37.13
HORVU4Hr1G033200.1	Barley	cytosol	66.67	35.71
TraesCS4B01G144200.1	Wheat	cytosol, golgi, plastid, unclear	65.56	35.12
TraesCS4A01G169100.1	Wheat	cytosol	65.56	35.12
Zm00001d014957_P001	Maize	plastid	64.44	34.73
OQU84170	Sorghum	cytosol	64.44	34.73
GSMUA_Achr11P...	Banana	cytosol	60.0	33.96
Bra022172.1-P	Field mustard	cytosol	61.11	32.74
Bra021187.1-P	Field mustard	cytosol	61.11	32.74
Bra001637.1-P	Field mustard	cytosol	61.11	32.74
Zm00001d014954_P002	Maize	cytosol	64.44	32.22
TraesCS6B01G002800.1	Wheat	cytosol	57.78	30.23

Protein Annotations

EnsemblPlants:Bra040541.1	EnsemblPlants:Bra040541.1-P	EnsemblPlantsGene:Bra040541	Gene3D:2.170.150.10	InterPro:IPR011323	InterPro:IPR034737
InterPro:Mss4-like_sf	InterPro:Mss4/transl-control_tumour	InterPro:TCTP	InterPro:Translational_control_tumour_p	PANTHER:PTHR11991	PANTHER:PTHR11991:SF0
PFAM:PF00838	PFscan:PS51797	PRINTS:PR01653	SEG:seg	SUPFAM:SSF51316	UniParc:UPI000253EDA7
UniProt:M4FHG3	MapMan:35.1	:	:	:	:

Description

AT3G05540 (E=8e-029) | INVOLVED IN: biological_process unknown; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Translationally controlled tumour protein (InterPro:IPR018105), Translationally controlled tumour-associated TCTP (InterPro:IPR001983), Mss4/translationally controlled tumour-associated TCTP (InterPro:IPR011323), Translationally controlled tumour protein, conserved site (InterPro:IPR018103), Mss4-like (InterPro:IPR011057); BEST Arabidopsis thaliana protein match is: TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) (TAIR:AT3G16640.1); Has 640 Blast hits to 640 proteins in 231 species: Archae - 0; Bacteria - 0; Metazoa - 343; Fungi - 110; Plants - 105; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).

Coordinates

chrScaffold000215:+:79954..80338

Molecular Weight (calculated)

10419.5 Da

IEP (calculated)

5.187

GRAVY (calculated)

-0.599

Length

90 amino acids

Sequence
(BLAST)

1: MNFDIGADPS AEEGGEDEGV DDQAVKVVDI IDTFRLQEQP PFDKKQFVMF MKRYLRQTVP KLESEKQKII KKHIDSATKF LVSKLKDFQL

Best Arabidopsis Sequence Match ( AT3G05540.1 )
(BLAST)

001: MLVYQDILTG DELLSDSFPY KEIENGMLWE VEGKWVVKGA MDFDIGANPG EEGGEDEGVD DQAVKVVDII DTFRLQEQPS FDKKQFVMFM KRYIKQLSPK
101: LDSENQELFK KHIESATKFL MSKLKDFQFF VGESMEGEEG SLVFAYYREG ATDPTFLYLA YGLKEIKC

Arabidopsis Description

Methionine sulfoxide reductase (MSS4-like) family protein [Source:TAIR;Acc:AT3G05540]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.