Factsheet for VIT_14s0060g02270.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	secretory
EpiLoc:	endoplasmic reticulum
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH33890	Soybean	cytosol, nucleus	91.07	91.07
VIT_05s0020g01170.t01	Wine grape	cytosol	89.88	90.42
GSMUA_Achr1P14760_001	Banana	cytosol	88.69	89.22
GSMUA_Achr3P00730_001	Banana	cytosol	88.69	89.22
GSMUA_Achr9P20280_001	Banana	cytosol	88.69	89.22
Os11t0660500-01	Rice	extracellular	87.5	87.5
GSMUA_Achr7P03740_001	Banana	cytosol	86.9	87.43
OQU84170	Sorghum	cytosol	86.31	86.83
AT3G05540.1	Thale cress	cytosol	84.52	84.52
HORVU4Hr1G033200.1	Barley	cytosol	82.14	82.14
TraesCS4B01G144200.1	Wheat	cytosol, golgi, plastid, unclear	81.55	81.55
Zm00001d014957_P001	Maize	plastid	80.95	81.44
TraesCS4A01G169100.1	Wheat	cytosol	80.95	80.95
TraesCS4D01G145400.1	Wheat	cytosol	60.12	77.69
GSMUA_Achr11P...	Banana	cytosol	72.62	76.73
Zm00001d014954_P002	Maize	cytosol	80.36	75.0
TraesCS6B01G002800.1	Wheat	cytosol	75.0	73.26
CDY18821	Canola	cytosol	38.69	72.22
Bra040541.1-P	Field mustard	cytosol	38.69	72.22
GSMUA_Achr5P00170_001	Banana	cytosol	64.29	72.0
KXG28492	Sorghum	cytosol	57.74	71.85

Protein Annotations

EntrezGene:100254426	wikigene:100254426	Gene3D:2.170.150.10	MapMan:35.1	ProteinID:CBI39510	ProteinID:CBI39510.3
UniProt:D7U9U6	EMBL:FN596746	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008017	GO:GO:0008150
GO:GO:0009987	GO:GO:0030154	InterPro:IPR011323	InterPro:IPR034737	EntrezGene:LOC100254426	wikigene:LOC100254426
InterPro:Mss4-like_sf	InterPro:Mss4/transl-control_tumour	PFAM:PF00838	PRINTS:PR01653	ScanProsite:PS01002	ScanProsite:PS01003
PFscan:PS51797	PANTHER:PTHR11991	PANTHER:PTHR11991:SF0	SUPFAM:SSF51316	TIGR:TC61485	InterPro:TCTP
InterPro:Translation_control_tumour_CS	InterPro:Translational_control_tumour_p	UniParc:UPI00015C95ED	ArrayExpress:VIT_14s0060g02270	EnsemblPlantsGene:VIT_14s0060g02270	EnsemblPlants:VIT_14s0060g02270.t01
RefSeq:XP_002283842	RefSeq:XP_002283842.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr14:-:1836572..1838534

Molecular Weight (calculated)

19066.7 Da

IEP (calculated)

4.345

GRAVY (calculated)

-0.292

Length

168 amino acids

Sequence
(BLAST)

001: MLVYQDLLTG DELLSDSFPY KEIENGMLWE VEGKWVVQGA VDVDIGANPS AEGGGEDEGV EDQAVKVVDI VDTFRLQEQP SFDKKQFVTF MKRYIKLLTP
101: KLEPEKQELF KKHIEGATKF LLPKLSDLQF FVGESMHDDG SLVFAYYKEG ATDPTFLYFA HGLKEIKC

Best Arabidopsis Sequence Match ( AT3G16640.1 )
(BLAST)

001: MLVYQDLLTG DELLSDSFPY KEIENGILWE VEGKWVTVGA VDVNIGANPS AEEGGEDEGV DDSTQKVVDI VDTFRLQEQP TYDKKGFIAY IKKYIKLLTP
101: KLSEEDQAVF KKGIEGATKF LLPRLSDFQF FVGEGMHDDS TLVFAYYKEG STNPTFLYFA HGLKEVKC

Arabidopsis Description

TCTP1Translationally-controlled tumor protein 1 [Source:UniProtKB/Swiss-Prot;Acc:P31265]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.