Factsheet for GSMUA_Achr5P00170_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
endoplasmic reticulum 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra040541.1-P	Field mustard	cytosol	40.67	67.78
CDY18821	Canola	cytosol	40.67	67.78
GSMUA_Achr3P00730_001	Banana	cytosol	72.67	65.27
GSMUA_Achr11P...	Banana	cytosol	68.67	64.78
VIT_14s0060g02270.t01	Wine grape	cytosol	72.0	64.29
GSMUA_Achr1P14760_001	Banana	cytosol	70.67	63.47
GSMUA_Achr9P20280_001	Banana	cytosol	70.0	62.87
GSMUA_Achr7P03740_001	Banana	cytosol	69.33	62.28
KRH33890	Soybean	cytosol, nucleus	68.67	61.31
HORVU4Hr1G033200.1	Barley	cytosol	67.33	60.12
KRH12062	Soybean	cytosol, nucleus	65.33	58.68
OQU84170	Sorghum	cytosol	65.33	58.68
KRH37101	Soybean	cytosol, endoplasmic reticulum, nucleus	65.33	58.33
Os11t0660500-01	Rice	extracellular	65.33	58.33
TraesCS4B01G144200.1	Wheat	cytosol, golgi, plastid, unclear	64.67	57.74
TraesCS4A01G169100.1	Wheat	cytosol	64.0	57.14
Zm00001d014957_P001	Maize	plastid	62.67	56.29
AT3G05540.1	Thale cress	cytosol	62.0	55.36
TraesCS6B01G002800.1	Wheat	cytosol	61.33	53.49
TraesCS4D01G145400.1	Wheat	cytosol	46.0	53.08
KXG28492	Sorghum	cytosol	47.33	52.59
Zm00001d014954_P002	Maize	cytosol	62.0	51.67
KRG92901	Soybean	cytosol	54.67	49.1

Protein Annotations

EnsemblPlants:GSMUA_Achr5P00170_001	EnsemblPlants:GSMUA_Achr5T00170_001	EnsemblPlantsGene:GSMUA_Achr5G00170_001	Gene3D:2.170.150.10	InterPro:IPR011323	InterPro:IPR034737
InterPro:Mss4-like_sf	InterPro:Mss4/transl-control_tumour	InterPro:TCTP	InterPro:Translation_control_tumour_CS	InterPro:Translational_control_tumour_p	PANTHER:PTHR11991
PANTHER:PTHR11991:SF0	PFAM:PF00838	PFscan:PS51797	PRINTS:PR01653	ScanProsite:PS01003	SEG:seg
SUPFAM:SSF51316	UniParc:UPI000295B81A	UniProt:M0SUE6	MapMan:35.1	:	:

Description

Translationally-controlled tumor protein homolog [Source:GMGC_GENE;Acc:GSMUA_Achr5G00170_001]

Coordinates

chr5:+:149356..150424

Molecular Weight (calculated)

17672.0 Da

IEP (calculated)

5.684

GRAVY (calculated)

-0.582

Length

150 amino acids

Sequence
(BLAST)

001: MFHKVMNFCQ TPFHTRKLKT EYYGKWRERS IDVDIGANPS QEGGEEDEGF DDTAVKVVDI VDTFRLQEQP SFDKKQFVTY IKRYIKLLTP KLEWEKQELF
101: KKHIEQSTKF LLSKLSDLQL FVGESMHDDG SMVFAYYKEG AADPTFLYFA

Best Arabidopsis Sequence Match ( AT3G05540.1 )
(BLAST)

001: MLVYQDILTG DELLSDSFPY KEIENGMLWE VEGKWVVKGA MDFDIGANPG EEGGEDEGVD DQAVKVVDII DTFRLQEQPS FDKKQFVMFM KRYIKQLSPK
101: LDSENQELFK KHIESATKFL MSKLKDFQFF VGESMEGEEG SLVFAYYREG ATDPTFLYLA YGLKEIKC

Arabidopsis Description

Methionine sulfoxide reductase (MSS4-like) family protein [Source:TAIR;Acc:AT3G05540]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.