CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, nucleus
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	secretory
EpiLoc:	endoplasmic reticulum
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH12062	Soybean	cytosol, nucleus	97.62	98.2
GSMUA_Achr1P14760_001	Banana	cytosol	87.5	88.02
GSMUA_Achr3P00730_001	Banana	cytosol	87.5	88.02
GSMUA_Achr9P20280_001	Banana	cytosol	87.5	88.02
GSMUA_Achr7P03740_001	Banana	cytosol	85.71	86.23
KRH33890	Soybean	cytosol, nucleus	85.12	85.12
Os11t0660500-01	Rice	extracellular	85.12	85.12
OQU84170	Sorghum	cytosol	79.76	80.24
HORVU4Hr1G033200.1	Barley	cytosol	79.17	79.17
TraesCS4B01G144200.1	Wheat	cytosol, golgi, plastid, unclear	79.17	79.17
TraesCS4A01G169100.1	Wheat	cytosol	78.57	78.57
Zm00001d014957_P001	Maize	plastid	76.79	77.25
TraesCS4D01G145400.1	Wheat	cytosol	59.52	76.92
Zm00001d014954_P002	Maize	cytosol	76.19	71.11
TraesCS6B01G002800.1	Wheat	cytosol	72.62	70.93
GSMUA_Achr11P...	Banana	cytosol	66.67	70.44
KXG28492	Sorghum	cytosol	54.76	68.15
GSMUA_Achr5P00170_001	Banana	cytosol	58.33	65.33
KRG92901	Soybean	cytosol	52.38	52.69

Protein Annotations

Gene3D:2.170.150.10	MapMan:35.1	EntrezGene:548038	EMBL:AF421558	EMBL:BT090888	UniProt:C6T0D4
EnsemblPlantsGene:GLYMA_09G044200	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008017	GO:GO:0008150	GO:GO:0009987
GO:GO:0030154	InterPro:IPR011323	InterPro:IPR034737	EnsemblPlants:KRH37101	ProteinID:KRH37101	ProteinID:KRH37101.1
InterPro:Mss4-like_sf	InterPro:Mss4/transl-control_tumour	PFAM:PF00838	PRINTS:PR01653	ScanProsite:PS01002	ScanProsite:PS01003
PFscan:PS51797	PANTHER:PTHR11991	PANTHER:PTHR11991:SF0	UniProt:Q944T2	SUPFAM:SSF51316	InterPro:TCTP
InterPro:Translation_control_tumour_CS	InterPro:Translational_control_tumour_p	UniParc:UPI0000136B39	SEG:seg	:	:

Description

TCTPhypothetical protein

Coordinates

chr9:+:3772273..3774458

Molecular Weight (calculated)

18996.6 Da

IEP (calculated)

4.326

GRAVY (calculated)

-0.214

Length

168 amino acids

Sequence
(BLAST)

001: MLVYQDLLTG DELLSDSFRY KEIENGMLWE VEGKWVVKGA VDVDIGANPS AEGGGEDEGV DDAAVKVVDI VDTFRLQEQP AFDKKQFVTF MKRFIKNLTP
101: KLDAEQQELF KKHIEGATKY LLSKIKDFQF FVGESMGDDA CLVFAYYKDG AADPTFLYFA YALKEVKC

Best Arabidopsis Sequence Match ( AT3G05540.1 )
(BLAST)

001: MLVYQDILTG DELLSDSFPY KEIENGMLWE VEGKWVVKGA MDFDIGANPG EEGGEDEGVD DQAVKVVDII DTFRLQEQPS FDKKQFVMFM KRYIKQLSPK
101: LDSENQELFK KHIESATKFL MSKLKDFQFF VGESMEGEEG SLVFAYYREG ATDPTFLYLA YGLKEIKC

Arabidopsis Description

Methionine sulfoxide reductase (MSS4-like) family protein [Source:TAIR;Acc:AT3G05540]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.